Hb_002783_320

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig2783: 263092-267496
Sequence    

Annotation

kegg
ID rcu:RCOM_1597450
description E2F4,5, putative
nr
ID XP_012073812.1
description PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
swissprot
ID Q9FV70
description Transcription factor E2FC OS=Arabidopsis thaliana GN=E2FC PE=1 SV=1
trembl
ID A0A067KXD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08226 PE=3 SV=1
Gene Ontology
ID GO:0005634
description transcription factor e2fc isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29073: 266133-267335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_320 0.0 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
2 Hb_010578_050 0.1153625844 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
3 Hb_000030_260 0.1345028876 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_000676_030 0.1360114826 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
5 Hb_017866_020 0.1412116023 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
6 Hb_011970_040 0.1431345322 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004195_170 0.1440492596 - - ATP binding protein, putative [Ricinus communis]
8 Hb_008406_020 0.145840508 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
9 Hb_003453_030 0.1484504983 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
10 Hb_000657_030 0.1490066324 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
11 Hb_000625_060 0.1500095628 - - Protein P21, putative [Ricinus communis]
12 Hb_000836_390 0.1522821191 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
13 Hb_000141_220 0.1541533923 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
14 Hb_001838_010 0.1548925406 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
15 Hb_001073_060 0.1550123972 - - phosphate transporter 1 [Hevea brasiliensis]
16 Hb_164010_090 0.1560151543 - - cellulose synthase, putative [Ricinus communis]
17 Hb_000579_180 0.157608348 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
18 Hb_002007_140 0.1592756083 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
19 Hb_003938_010 0.1603696409 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
20 Hb_009581_040 0.161524908 - - hypothetical protein B456_011G052100 [Gossypium raimondii]

Gene co-expression network

sample Hb_002783_320 Hb_002783_320 Hb_010578_050 Hb_010578_050 Hb_002783_320--Hb_010578_050 Hb_000030_260 Hb_000030_260 Hb_002783_320--Hb_000030_260 Hb_000676_030 Hb_000676_030 Hb_002783_320--Hb_000676_030 Hb_017866_020 Hb_017866_020 Hb_002783_320--Hb_017866_020 Hb_011970_040 Hb_011970_040 Hb_002783_320--Hb_011970_040 Hb_004195_170 Hb_004195_170 Hb_002783_320--Hb_004195_170 Hb_005186_090 Hb_005186_090 Hb_010578_050--Hb_005186_090 Hb_000625_060 Hb_000625_060 Hb_010578_050--Hb_000625_060 Hb_010578_050--Hb_000030_260 Hb_000836_390 Hb_000836_390 Hb_010578_050--Hb_000836_390 Hb_000120_070 Hb_000120_070 Hb_010578_050--Hb_000120_070 Hb_011791_010 Hb_011791_010 Hb_000030_260--Hb_011791_010 Hb_000223_050 Hb_000223_050 Hb_000030_260--Hb_000223_050 Hb_001838_010 Hb_001838_010 Hb_000030_260--Hb_001838_010 Hb_000723_120 Hb_000723_120 Hb_000030_260--Hb_000723_120 Hb_000676_030--Hb_011791_010 Hb_002621_030 Hb_002621_030 Hb_000676_030--Hb_002621_030 Hb_001073_060 Hb_001073_060 Hb_000676_030--Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_000676_030--Hb_002219_090 Hb_079955_010 Hb_079955_010 Hb_000676_030--Hb_079955_010 Hb_005000_200 Hb_005000_200 Hb_000676_030--Hb_005000_200 Hb_000077_460 Hb_000077_460 Hb_017866_020--Hb_000077_460 Hb_002003_020 Hb_002003_020 Hb_017866_020--Hb_002003_020 Hb_013914_020 Hb_013914_020 Hb_017866_020--Hb_013914_020 Hb_000045_180 Hb_000045_180 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_001283_010 Hb_001283_010 Hb_017866_020--Hb_001283_010 Hb_003031_030 Hb_003031_030 Hb_011970_040--Hb_003031_030 Hb_000670_110 Hb_000670_110 Hb_011970_040--Hb_000670_110 Hb_001514_210 Hb_001514_210 Hb_011970_040--Hb_001514_210 Hb_001863_460 Hb_001863_460 Hb_011970_040--Hb_001863_460 Hb_001248_030 Hb_001248_030 Hb_011970_040--Hb_001248_030 Hb_003453_030 Hb_003453_030 Hb_004195_170--Hb_003453_030 Hb_000086_370 Hb_000086_370 Hb_004195_170--Hb_000086_370 Hb_012807_060 Hb_012807_060 Hb_004195_170--Hb_012807_060 Hb_022501_020 Hb_022501_020 Hb_004195_170--Hb_022501_020 Hb_000657_030 Hb_000657_030 Hb_004195_170--Hb_000657_030 Hb_001408_050 Hb_001408_050 Hb_004195_170--Hb_001408_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0472457 2.62241 0.40838 0.676765 0.0424476 0.0846315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0506737 0.0199349 0 2.2389 0.083986

CAGE analysis