Hb_002784_020

Information

Type -
Description -
Location Contig2784: 25571-31707
Sequence    

Annotation

kegg
ID rcu:RCOM_1451910
description protein arginine n-methyltransferase, putative (EC:2.1.1.125)
nr
ID XP_012068703.1
description PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
swissprot
ID Q0WVD6
description Probable protein arginine N-methyltransferase 3 OS=Arabidopsis thaliana GN=PRMT3 PE=2 SV=1
trembl
ID A0A067L8X2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24553 PE=4 SV=1
Gene Ontology
ID GO:0008469
description probable protein arginine n-methyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29079: 25596-29786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_020 0.0 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
2 Hb_017862_020 0.0530172722 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
3 Hb_164544_010 0.0556866437 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
4 Hb_002375_010 0.0621014419 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
5 Hb_000696_230 0.0645617045 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
6 Hb_000617_180 0.064740132 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_028872_090 0.0654231376 - - PREDICTED: urease [Jatropha curcas]
8 Hb_033642_090 0.0655439002 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000935_010 0.0656988422 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
10 Hb_000089_120 0.0658921274 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_001357_250 0.0669830903 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
12 Hb_063716_100 0.0695253649 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
13 Hb_004235_080 0.0705436499 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
14 Hb_001089_110 0.0721239227 - - conserved hypothetical protein [Ricinus communis]
15 Hb_183612_040 0.0731505337 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
16 Hb_001157_090 0.0747485439 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
17 Hb_000025_410 0.0747758117 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
18 Hb_001635_090 0.0748772668 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
19 Hb_000020_150 0.0751567991 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
20 Hb_000656_380 0.0752731883 - - PREDICTED: exportin-T [Jatropha curcas]

Gene co-expression network

sample Hb_002784_020 Hb_002784_020 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_000207_180 Hb_000207_180 Hb_017862_020--Hb_000207_180 Hb_002686_030 Hb_002686_030 Hb_017862_020--Hb_002686_030 Hb_000225_040 Hb_000225_040 Hb_017862_020--Hb_000225_040 Hb_000395_130 Hb_000395_130 Hb_017862_020--Hb_000395_130 Hb_000579_230 Hb_000579_230 Hb_017862_020--Hb_000579_230 Hb_004235_080 Hb_004235_080 Hb_164544_010--Hb_004235_080 Hb_001089_110 Hb_001089_110 Hb_164544_010--Hb_001089_110 Hb_002652_030 Hb_002652_030 Hb_164544_010--Hb_002652_030 Hb_000089_120 Hb_000089_120 Hb_164544_010--Hb_000089_120 Hb_164544_010--Hb_017862_020 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_000347_070 Hb_000347_070 Hb_002375_010--Hb_000347_070 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110 Hb_002375_010--Hb_000617_180 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000617_180--Hb_000347_070 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290 Hb_000163_220 Hb_000163_220 Hb_028872_090--Hb_000163_220 Hb_000020_150 Hb_000020_150 Hb_028872_090--Hb_000020_150 Hb_063716_100 Hb_063716_100 Hb_028872_090--Hb_063716_100 Hb_028872_090--Hb_000089_120 Hb_003861_050 Hb_003861_050 Hb_028872_090--Hb_003861_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.198 13.7563 12.5873 9.61643 13.4358 16.7667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.331 12.786 10.7213 19.6211 9.24507

CAGE analysis