Hb_002784_030

Information

Type -
Description -
Location Contig2784: 32331-49021
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06740g
description POPTRDRAFT_708460; hypothetical protein
nr
ID XP_002297735.2
description hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GLY7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s06740g PE=4 SV=2
Gene Ontology
ID GO:0005739
description hypothetical protein POPTR_0001s06740g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29081: 31741-34410 , PASA_asmbl_29082: 35261-43011 , PASA_asmbl_29083: 47004-49073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_030 0.0 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
2 Hb_000640_070 0.0582312293 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
3 Hb_001552_030 0.0679524296 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
4 Hb_012215_010 0.0703107235 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
5 Hb_008397_010 0.0718056972 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
6 Hb_002475_040 0.0735219238 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
7 Hb_073973_150 0.0757899148 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
8 Hb_001488_220 0.079279449 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
9 Hb_002675_030 0.0806974388 - - coatomer beta subunit, putative [Ricinus communis]
10 Hb_008511_020 0.0817182579 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
11 Hb_004109_370 0.0837639735 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_001194_020 0.0839332226 - - microtubule associated protein xmap215, putative [Ricinus communis]
13 Hb_000284_230 0.0863020027 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
14 Hb_002539_110 0.0876761531 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
15 Hb_010272_010 0.0880609011 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
16 Hb_001085_290 0.0885075898 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
17 Hb_000252_050 0.0890574132 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
18 Hb_000320_290 0.0894406626 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
19 Hb_001789_030 0.0923187177 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
20 Hb_086287_010 0.0926503178 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002784_030 Hb_002784_030 Hb_000640_070 Hb_000640_070 Hb_002784_030--Hb_000640_070 Hb_001552_030 Hb_001552_030 Hb_002784_030--Hb_001552_030 Hb_012215_010 Hb_012215_010 Hb_002784_030--Hb_012215_010 Hb_008397_010 Hb_008397_010 Hb_002784_030--Hb_008397_010 Hb_002475_040 Hb_002475_040 Hb_002784_030--Hb_002475_040 Hb_073973_150 Hb_073973_150 Hb_002784_030--Hb_073973_150 Hb_000640_070--Hb_012215_010 Hb_000640_070--Hb_073973_150 Hb_000640_070--Hb_008397_010 Hb_010272_010 Hb_010272_010 Hb_000640_070--Hb_010272_010 Hb_001194_020 Hb_001194_020 Hb_000640_070--Hb_001194_020 Hb_000017_230 Hb_000017_230 Hb_001552_030--Hb_000017_230 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_001085_290 Hb_001085_290 Hb_001552_030--Hb_001085_290 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_121089_030 Hb_121089_030 Hb_001552_030--Hb_121089_030 Hb_002539_110 Hb_002539_110 Hb_012215_010--Hb_002539_110 Hb_012215_010--Hb_010272_010 Hb_000362_170 Hb_000362_170 Hb_012215_010--Hb_000362_170 Hb_000664_110 Hb_000664_110 Hb_012215_010--Hb_000664_110 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_008397_010--Hb_001194_020 Hb_000336_020 Hb_000336_020 Hb_008397_010--Hb_000336_020 Hb_000284_230 Hb_000284_230 Hb_008397_010--Hb_000284_230 Hb_008397_010--Hb_073973_150 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160 Hb_002475_040--Hb_000284_230 Hb_004064_050 Hb_004064_050 Hb_002475_040--Hb_004064_050 Hb_158092_080 Hb_158092_080 Hb_002475_040--Hb_158092_080 Hb_003124_160 Hb_003124_160 Hb_002475_040--Hb_003124_160 Hb_012055_110 Hb_012055_110 Hb_002475_040--Hb_012055_110 Hb_001935_160 Hb_001935_160 Hb_002475_040--Hb_001935_160 Hb_073973_150--Hb_001194_020 Hb_073973_150--Hb_000284_230 Hb_003104_040 Hb_003104_040 Hb_073973_150--Hb_003104_040 Hb_073973_150--Hb_002475_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2709 12.1799 15.8249 19.6988 13.5216 16.0259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15193 4.05428 7.86643 15.7662 15.8906

CAGE analysis