Hb_002784_040

Information

Type -
Description -
Location Contig2784: 57546-63504
Sequence    

Annotation

kegg
ID rcu:RCOM_1451950
description peptidyl-prolyl cis-trans isomerase h, ppih, putative (EC:5.2.1.8)
nr
ID XP_002513025.1
description peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
swissprot
ID Q9ZVJ4
description Peptidyl-prolyl cis-trans isomerase CYP22 OS=Arabidopsis thaliana GN=CYP22 PE=2 SV=1
trembl
ID B9RG73
description Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_1451950 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_040 0.0 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
2 Hb_006816_150 0.0735530745 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
3 Hb_000098_190 0.0762514265 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
4 Hb_008578_010 0.089091086 - - 30S ribosomal protein S19, putative [Ricinus communis]
5 Hb_001369_650 0.1010329238 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
6 Hb_001623_330 0.1088184992 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
7 Hb_003001_060 0.1142503834 - - wound-responsive family protein [Populus trichocarpa]
8 Hb_000977_080 0.1160913689 - - type II inositol 5-phosphatase, putative [Ricinus communis]
9 Hb_052135_030 0.1166007959 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
10 Hb_000154_080 0.1169365852 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
11 Hb_010810_050 0.1175424529 - - hypothetical protein [Cleome spinosa]
12 Hb_000714_030 0.1177059437 - - Nucleosome assembly [Gossypium arboreum]
13 Hb_011805_080 0.1182313594 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
14 Hb_000742_140 0.1187180725 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003752_080 0.1202279292 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
16 Hb_000019_230 0.1210933673 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
17 Hb_003551_020 0.1211659145 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
18 Hb_005332_070 0.1218140889 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
19 Hb_003878_190 0.1240387344 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
20 Hb_004645_050 0.1246159647 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]

Gene co-expression network

sample Hb_002784_040 Hb_002784_040 Hb_006816_150 Hb_006816_150 Hb_002784_040--Hb_006816_150 Hb_000098_190 Hb_000098_190 Hb_002784_040--Hb_000098_190 Hb_008578_010 Hb_008578_010 Hb_002784_040--Hb_008578_010 Hb_001369_650 Hb_001369_650 Hb_002784_040--Hb_001369_650 Hb_001623_330 Hb_001623_330 Hb_002784_040--Hb_001623_330 Hb_003001_060 Hb_003001_060 Hb_002784_040--Hb_003001_060 Hb_010810_050 Hb_010810_050 Hb_006816_150--Hb_010810_050 Hb_006816_150--Hb_008578_010 Hb_000019_230 Hb_000019_230 Hb_006816_150--Hb_000019_230 Hb_006816_150--Hb_001369_650 Hb_003120_060 Hb_003120_060 Hb_006816_150--Hb_003120_060 Hb_002107_130 Hb_002107_130 Hb_000098_190--Hb_002107_130 Hb_000714_030 Hb_000714_030 Hb_000098_190--Hb_000714_030 Hb_000098_190--Hb_008578_010 Hb_000098_190--Hb_006816_150 Hb_000933_050 Hb_000933_050 Hb_000098_190--Hb_000933_050 Hb_001021_230 Hb_001021_230 Hb_008578_010--Hb_001021_230 Hb_000742_140 Hb_000742_140 Hb_008578_010--Hb_000742_140 Hb_008578_010--Hb_001369_650 Hb_000392_270 Hb_000392_270 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_001369_650--Hb_003001_060 Hb_000977_080 Hb_000977_080 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_001623_330--Hb_001369_650 Hb_000866_300 Hb_000866_300 Hb_001623_330--Hb_000866_300 Hb_001623_330--Hb_003001_060 Hb_001623_330--Hb_000392_270 Hb_001623_330--Hb_000977_080 Hb_001623_330--Hb_000045_130 Hb_003878_190 Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_003058_070 Hb_003058_070 Hb_003001_060--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_003001_060--Hb_000417_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90374 2.40379 1.6957 0.640001 7.39646 5.09744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80861 8.11955 1.85818 1.77136 1.2349

CAGE analysis