Hb_002784_050

Information

Type -
Description -
Location Contig2784: 63976-66609
Sequence    

Annotation

kegg
ID tcc:TCM_045026
description LYR family of Fe/S cluster biogenesis protein
nr
ID XP_012068683.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
swissprot
ID Q9LHI0
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1
trembl
ID A0A067KWF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24545 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29084: 64036-66456
cDNA
(Sanger)
(ID:Location)		 003_P11.ab1: 64036-66454 , 008_P12.ab1: 64104-66395 , 026_C01.ab1: 64085-66321 , 035_A06.ab1: 64036-66454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_050 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
2 Hb_022250_030 0.0626365216 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002685_140 0.0741636619 - - PREDICTED: membrin-11 [Jatropha curcas]
4 Hb_000676_050 0.0753929325 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
5 Hb_001635_170 0.076223368 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
6 Hb_019962_030 0.0785585356 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
7 Hb_000327_120 0.0795782254 - - FGFR1 oncogene partner, putative [Ricinus communis]
8 Hb_000477_030 0.0797546462 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
9 Hb_001439_150 0.0814588803 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
10 Hb_007007_050 0.08232556 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
11 Hb_000666_110 0.0850902938 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
12 Hb_010661_030 0.0865859958 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
13 Hb_000645_050 0.0875820278 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
14 Hb_003687_230 0.088536908 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
15 Hb_033153_050 0.0891262476 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
16 Hb_010968_010 0.0897866146 - - Golgi snare 12 isoform 1 [Theobroma cacao]
17 Hb_029920_050 0.0898319573 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
18 Hb_001504_150 0.0900965586 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
19 Hb_054865_100 0.0910341697 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
20 Hb_008887_050 0.0926217247 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]

Gene co-expression network

sample Hb_002784_050 Hb_002784_050 Hb_022250_030 Hb_022250_030 Hb_002784_050--Hb_022250_030 Hb_002685_140 Hb_002685_140 Hb_002784_050--Hb_002685_140 Hb_000676_050 Hb_000676_050 Hb_002784_050--Hb_000676_050 Hb_001635_170 Hb_001635_170 Hb_002784_050--Hb_001635_170 Hb_019962_030 Hb_019962_030 Hb_002784_050--Hb_019962_030 Hb_000327_120 Hb_000327_120 Hb_002784_050--Hb_000327_120 Hb_022250_030--Hb_001635_170 Hb_007919_060 Hb_007919_060 Hb_022250_030--Hb_007919_060 Hb_000613_090 Hb_000613_090 Hb_022250_030--Hb_000613_090 Hb_000462_140 Hb_000462_140 Hb_022250_030--Hb_000462_140 Hb_000699_130 Hb_000699_130 Hb_022250_030--Hb_000699_130 Hb_002685_140--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_010968_010 Hb_010968_010 Hb_000676_050--Hb_010968_010 Hb_008887_050 Hb_008887_050 Hb_000676_050--Hb_008887_050 Hb_000933_150 Hb_000933_150 Hb_000676_050--Hb_000933_150 Hb_002639_150 Hb_002639_150 Hb_000676_050--Hb_002639_150 Hb_000205_120 Hb_000205_120 Hb_000676_050--Hb_000205_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.019 72.5522 89.1457 56.677 174.295 112.55
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.899 123.723 97.3624 43.367 37.2228

CAGE analysis