Hb_002784_120

Information

Type -
Description -
Location Contig2784: 123409-128519
Sequence    

Annotation

kegg
ID rcu:RCOM_1452020
description diphosphoinositol polyphosphate phosphohydrolase, putative
nr
ID XP_002513032.1
description diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
swissprot
ID Q9LHK1
description Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1
trembl
ID B9RG80
description Diphosphoinositol polyphosphate phosphohydrolase, putative OS=Ricinus communis GN=RCOM_1452020 PE=3 SV=1
Gene Ontology
ID GO:0008486
description nudix hydrolase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29097: 127046-128541 , PASA_asmbl_29099: 128146-128510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_120 0.0 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
2 Hb_012505_010 0.1080345306 - - mak, putative [Ricinus communis]
3 Hb_000302_220 0.1267849468 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
4 Hb_001545_100 0.128349767 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
5 Hb_138585_060 0.1404587152 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
6 Hb_000975_300 0.1421419727 - - Rab2 [Hevea brasiliensis]
7 Hb_000127_110 0.1432336107 - - -
8 Hb_007594_120 0.1439271276 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
9 Hb_000062_340 0.1445224776 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
10 Hb_001040_110 0.1448080193 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
11 Hb_005928_100 0.145769296 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
12 Hb_000140_050 0.1470431457 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
13 Hb_020301_040 0.1472517224 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
14 Hb_000479_010 0.1473698255 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
15 Hb_032803_010 0.1488026298 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
16 Hb_004375_140 0.149502162 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
17 Hb_002876_120 0.1499255515 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
18 Hb_002182_030 0.1505472966 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
19 Hb_000530_070 0.1539913025 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
20 Hb_001360_070 0.1550413657 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002784_120 Hb_002784_120 Hb_012505_010 Hb_012505_010 Hb_002784_120--Hb_012505_010 Hb_000302_220 Hb_000302_220 Hb_002784_120--Hb_000302_220 Hb_001545_100 Hb_001545_100 Hb_002784_120--Hb_001545_100 Hb_138585_060 Hb_138585_060 Hb_002784_120--Hb_138585_060 Hb_000975_300 Hb_000975_300 Hb_002784_120--Hb_000975_300 Hb_000127_110 Hb_000127_110 Hb_002784_120--Hb_000127_110 Hb_001277_070 Hb_001277_070 Hb_012505_010--Hb_001277_070 Hb_004375_140 Hb_004375_140 Hb_012505_010--Hb_004375_140 Hb_129204_030 Hb_129204_030 Hb_012505_010--Hb_129204_030 Hb_000240_090 Hb_000240_090 Hb_012505_010--Hb_000240_090 Hb_000608_370 Hb_000608_370 Hb_012505_010--Hb_000608_370 Hb_001140_060 Hb_001140_060 Hb_012505_010--Hb_001140_060 Hb_003632_010 Hb_003632_010 Hb_000302_220--Hb_003632_010 Hb_001842_040 Hb_001842_040 Hb_000302_220--Hb_001842_040 Hb_000302_220--Hb_138585_060 Hb_000023_340 Hb_000023_340 Hb_000302_220--Hb_000023_340 Hb_000963_180 Hb_000963_180 Hb_000302_220--Hb_000963_180 Hb_000302_220--Hb_001140_060 Hb_003540_030 Hb_003540_030 Hb_001545_100--Hb_003540_030 Hb_000140_050 Hb_000140_050 Hb_001545_100--Hb_000140_050 Hb_001279_340 Hb_001279_340 Hb_001545_100--Hb_001279_340 Hb_004225_080 Hb_004225_080 Hb_001545_100--Hb_004225_080 Hb_006831_120 Hb_006831_120 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330 Hb_021409_030 Hb_021409_030 Hb_138585_060--Hb_021409_030 Hb_000072_080 Hb_000072_080 Hb_138585_060--Hb_000072_080 Hb_000258_170 Hb_000258_170 Hb_138585_060--Hb_000258_170 Hb_001141_030 Hb_001141_030 Hb_138585_060--Hb_001141_030 Hb_007100_030 Hb_007100_030 Hb_138585_060--Hb_007100_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010 Hb_000062_340 Hb_000062_340 Hb_000975_300--Hb_000062_340 Hb_007594_120 Hb_007594_120 Hb_000975_300--Hb_007594_120 Hb_020301_040 Hb_020301_040 Hb_000975_300--Hb_020301_040 Hb_000975_300--Hb_000963_180 Hb_002182_030 Hb_002182_030 Hb_000975_300--Hb_002182_030 Hb_002876_120 Hb_002876_120 Hb_000975_300--Hb_002876_120 Hb_000127_120 Hb_000127_120 Hb_000127_110--Hb_000127_120 Hb_011377_050 Hb_011377_050 Hb_000127_110--Hb_011377_050 Hb_000127_110--Hb_001545_100 Hb_000127_110--Hb_000140_050 Hb_000127_110--Hb_003540_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11337 0.341449 2.77999 2.11399 2.26593 2.09846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94797 8.1823 8.38827 0.641573 2.39841

CAGE analysis