Hb_002785_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig2785: 15078-16212
Sequence    

Annotation

kegg
ID rcu:RCOM_0498800
description DNA binding protein, putative
nr
ID XP_012091086.1
description PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067LKH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01329 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29103: 16193-16401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002785_010 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
2 Hb_003050_330 0.0967449121 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
3 Hb_032202_010 0.0981012037 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
4 Hb_000369_040 0.1030458671 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_001158_250 0.1049881464 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000752_040 0.1122223159 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
7 Hb_007666_010 0.1144860093 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
8 Hb_007103_020 0.1181024825 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
9 Hb_003494_150 0.1181938911 - - Silicon transporter, putative [Ricinus communis]
10 Hb_001232_040 0.1239169948 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
11 Hb_005183_030 0.1280783614 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
12 Hb_000622_030 0.1285934997 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
13 Hb_000201_010 0.1297528933 - - unnamed protein product [Vitis vinifera]
14 Hb_005790_010 0.1307531591 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
15 Hb_002193_080 0.1326486205 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
16 Hb_002631_110 0.1374520325 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
17 Hb_000120_480 0.1391656697 - - -
18 Hb_000347_320 0.1410925315 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
19 Hb_000271_130 0.142221966 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
20 Hb_003008_020 0.1430029929 - - auxin-responsive family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002785_010 Hb_002785_010 Hb_003050_330 Hb_003050_330 Hb_002785_010--Hb_003050_330 Hb_032202_010 Hb_032202_010 Hb_002785_010--Hb_032202_010 Hb_000369_040 Hb_000369_040 Hb_002785_010--Hb_000369_040 Hb_001158_250 Hb_001158_250 Hb_002785_010--Hb_001158_250 Hb_000752_040 Hb_000752_040 Hb_002785_010--Hb_000752_040 Hb_007666_010 Hb_007666_010 Hb_002785_010--Hb_007666_010 Hb_003494_150 Hb_003494_150 Hb_003050_330--Hb_003494_150 Hb_003008_020 Hb_003008_020 Hb_003050_330--Hb_003008_020 Hb_003050_330--Hb_032202_010 Hb_008689_010 Hb_008689_010 Hb_003050_330--Hb_008689_010 Hb_002193_080 Hb_002193_080 Hb_003050_330--Hb_002193_080 Hb_003050_330--Hb_007666_010 Hb_032202_010--Hb_000752_040 Hb_032202_010--Hb_003494_150 Hb_032202_010--Hb_007666_010 Hb_032202_010--Hb_000369_040 Hb_000369_040--Hb_003050_330 Hb_000369_040--Hb_007666_010 Hb_005051_010 Hb_005051_010 Hb_000369_040--Hb_005051_010 Hb_001242_040 Hb_001242_040 Hb_000369_040--Hb_001242_040 Hb_000622_030 Hb_000622_030 Hb_001158_250--Hb_000622_030 Hb_000120_480 Hb_000120_480 Hb_001158_250--Hb_000120_480 Hb_005723_090 Hb_005723_090 Hb_001158_250--Hb_005723_090 Hb_001232_040 Hb_001232_040 Hb_001158_250--Hb_001232_040 Hb_001305_020 Hb_001305_020 Hb_001158_250--Hb_001305_020 Hb_000271_130 Hb_000271_130 Hb_001158_250--Hb_000271_130 Hb_000752_040--Hb_003008_020 Hb_000752_040--Hb_007666_010 Hb_000752_040--Hb_003050_330 Hb_005018_030 Hb_005018_030 Hb_000752_040--Hb_005018_030 Hb_007666_010--Hb_003494_150 Hb_000347_320 Hb_000347_320 Hb_007666_010--Hb_000347_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.34431 1.93028 7.565 0.144286 0.0727689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.302616 10.8623

CAGE analysis