Hb_002785_030

Information

Type -
Description -
Location Contig2785: 50991-51509
Sequence    

Annotation

kegg
ID tcc:TCM_042606
description Polyketide cyclase/dehydrase and lipid transport superfamily protein
nr
ID XP_007009095.1
description Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
swissprot
ID P59082
description Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1
trembl
ID A0A061FKP8
description Polyketide cyclase/dehydrase and lipid transport superfamily protein OS=Theobroma cacao GN=TCM_042606 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29106: 52131-54900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002785_030 0.0 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
2 Hb_001006_040 0.0324693433 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
3 Hb_001292_030 0.0391201908 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
4 Hb_002529_120 0.0417597364 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
5 Hb_001322_120 0.0419751187 - - nutrient reservoir, putative [Ricinus communis]
6 Hb_001028_040 0.0454079394 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
7 Hb_002368_060 0.052180066 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006570_030 0.0546294377 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_000139_310 0.0577092456 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
10 Hb_000531_100 0.0601244501 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
11 Hb_001975_100 0.0658118448 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
12 Hb_000230_420 0.0678690263 - - GS [Hevea brasiliensis subsp. brasiliensis]
13 Hb_146225_020 0.0702530064 - - chlorophyll A/B binding protein, putative [Ricinus communis]
14 Hb_005063_030 0.0724481601 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_000088_230 0.0726151733 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
16 Hb_001766_160 0.0745218091 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
17 Hb_000589_340 0.0753851176 - - unknown [Populus trichocarpa x Populus deltoides]
18 Hb_002272_210 0.0763590086 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
19 Hb_001958_060 0.0773477643 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
20 Hb_013726_060 0.0787581709 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002785_030 Hb_002785_030 Hb_001006_040 Hb_001006_040 Hb_002785_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002785_030--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_002785_030--Hb_002529_120 Hb_001322_120 Hb_001322_120 Hb_002785_030--Hb_001322_120 Hb_001028_040 Hb_001028_040 Hb_002785_030--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_002785_030--Hb_002368_060 Hb_001006_040--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_001006_040--Hb_001975_100 Hb_001006_040--Hb_001322_120 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001006_040--Hb_001028_040 Hb_001292_030--Hb_001322_120 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_006570_030 Hb_006570_030 Hb_001292_030--Hb_006570_030 Hb_001292_030--Hb_001975_100 Hb_002529_120--Hb_001322_120 Hb_000531_100 Hb_000531_100 Hb_002529_120--Hb_000531_100 Hb_002529_120--Hb_001292_030 Hb_013726_060 Hb_013726_060 Hb_002529_120--Hb_013726_060 Hb_002529_120--Hb_001006_040 Hb_001322_120--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_001028_040--Hb_002368_060 Hb_001028_040--Hb_006570_030 Hb_000139_310 Hb_000139_310 Hb_001028_040--Hb_000139_310 Hb_001028_040--Hb_001322_120 Hb_001028_040--Hb_001292_030 Hb_002368_060--Hb_006570_030 Hb_002368_060--Hb_000139_310 Hb_002368_060--Hb_001322_120 Hb_002368_060--Hb_001292_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0558742 0.630749 0.236647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.935203

CAGE analysis