Hb_002793_060

Information

Type -
Description -
Location Contig2793: 28849-31533
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17590g
description POPTRDRAFT_770030; pentatricopeptide repeat-containing family protein
nr
ID XP_011013426.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
swissprot
ID Q8LK93
description Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
trembl
ID A0A067L204
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15610 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at2g02980

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002793_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
2 Hb_001489_120 0.1083147894 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
3 Hb_004032_310 0.1251607916 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
4 Hb_001662_170 0.1300082024 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_002534_050 0.1326047758 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
6 Hb_000071_140 0.1328823763 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
7 Hb_002774_150 0.1440785143 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
8 Hb_002485_040 0.1477550432 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
9 Hb_007849_050 0.1519271371 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
10 Hb_001053_200 0.1537814915 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
11 Hb_002400_160 0.1542228216 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
12 Hb_004324_060 0.1542270132 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_008103_100 0.1569957864 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
14 Hb_007313_070 0.157095788 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
15 Hb_000126_070 0.1584393383 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
16 Hb_004994_300 0.1588129288 - - synaptotagmin, putative [Ricinus communis]
17 Hb_000448_060 0.1597957032 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
18 Hb_001865_060 0.1600332881 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
19 Hb_048755_020 0.1646496045 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
20 Hb_001258_150 0.1653194831 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_002793_060 Hb_002793_060 Hb_001489_120 Hb_001489_120 Hb_002793_060--Hb_001489_120 Hb_004032_310 Hb_004032_310 Hb_002793_060--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_002793_060--Hb_001662_170 Hb_002534_050 Hb_002534_050 Hb_002793_060--Hb_002534_050 Hb_000071_140 Hb_000071_140 Hb_002793_060--Hb_000071_140 Hb_002774_150 Hb_002774_150 Hb_002793_060--Hb_002774_150 Hb_001489_120--Hb_000071_140 Hb_001258_150 Hb_001258_150 Hb_001489_120--Hb_001258_150 Hb_001489_120--Hb_004032_310 Hb_000803_060 Hb_000803_060 Hb_001489_120--Hb_000803_060 Hb_006414_020 Hb_006414_020 Hb_001489_120--Hb_006414_020 Hb_003752_120 Hb_003752_120 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_001662_170--Hb_012787_040 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_009040_010 Hb_009040_010 Hb_002534_050--Hb_009040_010 Hb_002534_050--Hb_000071_140 Hb_002534_050--Hb_001662_170 Hb_002534_050--Hb_011360_090 Hb_002534_050--Hb_001489_120 Hb_002534_050--Hb_001258_150 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_000071_140--Hb_004032_310 Hb_000071_140--Hb_001258_150 Hb_004324_060 Hb_004324_060 Hb_002774_150--Hb_004324_060 Hb_002485_040 Hb_002485_040 Hb_002774_150--Hb_002485_040 Hb_012038_010 Hb_012038_010 Hb_002774_150--Hb_012038_010 Hb_172421_010 Hb_172421_010 Hb_002774_150--Hb_172421_010 Hb_002774_150--Hb_004994_300 Hb_012753_040 Hb_012753_040 Hb_002774_150--Hb_012753_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.484982 2.99127 0.842038 0.372204 0.302557 0.320784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0546556 0.215008 0.121693 0.419905 0.768162

CAGE analysis