Hb_002793_080

Information

Type -
Description -
Location Contig2793: 52734-66158
Sequence    

Annotation

kegg
ID rcu:RCOM_0836480
description ribonuclease t2, putative (EC:3.1.27.1)
nr
ID XP_002522442.1
description ribonuclease t2, putative [Ricinus communis]
swissprot
ID P80022
description Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2
trembl
ID B9S8X3
description Ribonuclease t2, putative OS=Ricinus communis GN=RCOM_0836480 PE=3 SV=1
Gene Ontology
ID GO:0071944
description extracellular ribonuclease le-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002793_080 0.0 - - ribonuclease t2, putative [Ricinus communis]
2 Hb_000733_150 0.0094206616 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
3 Hb_036537_010 0.1602285413 - - ATP binding protein, putative [Ricinus communis]
4 Hb_051055_010 0.1636989922 - - -
5 Hb_020712_050 0.2058901033 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
6 Hb_000042_180 0.2187437789 - - -
7 Hb_034905_010 0.2433375175 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
8 Hb_003058_250 0.2598062731 - - hypothetical protein RCOM_0006440 [Ricinus communis]
9 Hb_000003_850 0.2951993853 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
10 Hb_176472_010 0.2954257403 - - BnaC01g33060D [Brassica napus]
11 Hb_003360_050 0.3412771905 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_002193_070 0.3661345232 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001163_140 0.3741907057 - - -
14 Hb_117807_030 0.3825963154 - - Protein MCM10 [Gossypium arboreum]
15 Hb_004970_210 0.38522417 - - -
16 Hb_002316_010 0.3888757374 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
17 Hb_168319_020 0.3890729859 - - conserved hypothetical protein [Ricinus communis]
18 Hb_153774_010 0.3916598209 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009449_050 0.3969497599 - - PREDICTED: serine/threonine-protein kinase HT1-like [Nelumbo nucifera]
20 Hb_001998_100 0.4098618982 - - -

Gene co-expression network

sample Hb_002793_080 Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_002793_080--Hb_000733_150 Hb_036537_010 Hb_036537_010 Hb_002793_080--Hb_036537_010 Hb_051055_010 Hb_051055_010 Hb_002793_080--Hb_051055_010 Hb_020712_050 Hb_020712_050 Hb_002793_080--Hb_020712_050 Hb_000042_180 Hb_000042_180 Hb_002793_080--Hb_000042_180 Hb_034905_010 Hb_034905_010 Hb_002793_080--Hb_034905_010 Hb_000733_150--Hb_036537_010 Hb_000733_150--Hb_051055_010 Hb_000733_150--Hb_020712_050 Hb_000733_150--Hb_000042_180 Hb_000733_150--Hb_034905_010 Hb_036537_010--Hb_051055_010 Hb_176472_010 Hb_176472_010 Hb_036537_010--Hb_176472_010 Hb_004316_090 Hb_004316_090 Hb_036537_010--Hb_004316_090 Hb_036537_010--Hb_020712_050 Hb_051055_010--Hb_020712_050 Hb_000003_850 Hb_000003_850 Hb_051055_010--Hb_000003_850 Hb_003058_250 Hb_003058_250 Hb_051055_010--Hb_003058_250 Hb_001242_010 Hb_001242_010 Hb_020712_050--Hb_001242_010 Hb_000110_390 Hb_000110_390 Hb_020712_050--Hb_000110_390 Hb_020712_050--Hb_000042_180 Hb_003360_050 Hb_003360_050 Hb_000042_180--Hb_003360_050 Hb_001998_100 Hb_001998_100 Hb_000042_180--Hb_001998_100 Hb_002193_070 Hb_002193_070 Hb_000042_180--Hb_002193_070 Hb_003014_010 Hb_003014_010 Hb_000042_180--Hb_003014_010 Hb_034905_010--Hb_176472_010 Hb_117807_030 Hb_117807_030 Hb_034905_010--Hb_117807_030 Hb_034905_010--Hb_000042_180 Hb_168319_020 Hb_168319_020 Hb_034905_010--Hb_168319_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.313173 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.231193 0 0

CAGE analysis