Hb_002794_030

Information

Type -
Description -
Location Contig2794: 36855-39429
Sequence    

Annotation

kegg
ID rcu:RCOM_1296800
description leucine-rich repeat-containing protein, putative
nr
ID KDP27361.1
description hypothetical protein JCGZ_20185 [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID A0A067JTS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20185 PE=4 SV=1
Gene Ontology
ID GO:0043531
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29133: 37553-38986 , PASA_asmbl_29134: 39308-39745 , PASA_asmbl_29135: 40158-41670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002794_030 0.0 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
2 Hb_007229_060 0.0851910671 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
3 Hb_000156_100 0.0914758748 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
4 Hb_000671_150 0.0929077452 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
5 Hb_000983_100 0.093282153 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
6 Hb_000196_090 0.0955944639 - - axonemal dynein light chain, putative [Ricinus communis]
7 Hb_002527_070 0.0960299516 - - axonemal dynein light chain, putative [Ricinus communis]
8 Hb_002890_280 0.09655147 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
9 Hb_008289_060 0.0987911698 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
10 Hb_002326_030 0.1005507549 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
11 Hb_000223_150 0.102185285 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
12 Hb_000086_570 0.103070075 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
13 Hb_000836_070 0.1037980154 - - protein binding protein, putative [Ricinus communis]
14 Hb_007672_010 0.1039224233 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
15 Hb_008085_040 0.105790038 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
16 Hb_004951_040 0.1078596882 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
17 Hb_008453_090 0.1104676417 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
18 Hb_000861_040 0.1117365295 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
19 Hb_000091_090 0.1124981143 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
20 Hb_002411_200 0.1137361342 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002794_030 Hb_002794_030 Hb_007229_060 Hb_007229_060 Hb_002794_030--Hb_007229_060 Hb_000156_100 Hb_000156_100 Hb_002794_030--Hb_000156_100 Hb_000671_150 Hb_000671_150 Hb_002794_030--Hb_000671_150 Hb_000983_100 Hb_000983_100 Hb_002794_030--Hb_000983_100 Hb_000196_090 Hb_000196_090 Hb_002794_030--Hb_000196_090 Hb_002527_070 Hb_002527_070 Hb_002794_030--Hb_002527_070 Hb_007229_060--Hb_000983_100 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_000861_040 Hb_000861_040 Hb_007229_060--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_007229_060--Hb_002326_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090 Hb_000836_080 Hb_000836_080 Hb_000156_100--Hb_000836_080 Hb_010710_040 Hb_010710_040 Hb_000156_100--Hb_010710_040 Hb_000156_100--Hb_000983_100 Hb_000836_070 Hb_000836_070 Hb_000156_100--Hb_000836_070 Hb_000156_100--Hb_007229_060 Hb_001881_020 Hb_001881_020 Hb_000671_150--Hb_001881_020 Hb_000205_270 Hb_000205_270 Hb_000671_150--Hb_000205_270 Hb_000193_290 Hb_000193_290 Hb_000671_150--Hb_000193_290 Hb_001109_020 Hb_001109_020 Hb_000671_150--Hb_001109_020 Hb_008289_060 Hb_008289_060 Hb_000671_150--Hb_008289_060 Hb_003018_190 Hb_003018_190 Hb_000671_150--Hb_003018_190 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_026988_020 Hb_026988_020 Hb_000983_100--Hb_026988_020 Hb_000983_100--Hb_002527_070 Hb_002540_030 Hb_002540_030 Hb_000196_090--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_000196_090--Hb_002609_280 Hb_007672_010 Hb_007672_010 Hb_000196_090--Hb_007672_010 Hb_000261_460 Hb_000261_460 Hb_000196_090--Hb_000261_460 Hb_001329_210 Hb_001329_210 Hb_000196_090--Hb_001329_210 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_002527_070--Hb_000861_040 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5271 5.62418 1.68916 3.05228 7.44777 15.695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2375 23.9248 28.828 6.51194 1.56926

CAGE analysis