Hb_002796_030

Information

Type -
Description -
Location Contig2796: 34218-39002
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002796_030 0.0 - - -
2 Hb_011525_020 0.1994015504 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
3 Hb_002135_040 0.2206422938 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_126838_020 0.2401546701 - - JHL22C18.7 [Jatropha curcas]
5 Hb_003360_020 0.2502140041 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
6 Hb_003012_080 0.2504180738 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_003376_170 0.2571004812 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
8 Hb_012518_060 0.2616156867 - - -
9 Hb_004545_050 0.2635969959 - - Cu/Zn superoxide dismutase [Hevea brasiliensis]
10 Hb_003859_010 0.2657653788 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
11 Hb_000565_020 0.2677282104 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
12 Hb_000707_070 0.2695386367 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
13 Hb_000441_230 0.2711278911 - - unnamed protein product [Coffea canephora]
14 Hb_002249_110 0.2731050254 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
15 Hb_000566_140 0.2772233478 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
16 Hb_000466_060 0.2797227792 - - phosphofructokinase [Hevea brasiliensis]
17 Hb_001252_170 0.2812696642 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
18 Hb_000580_060 0.2854863482 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
19 Hb_000009_640 0.2855352422 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_12318 [Jatropha curcas]
20 Hb_000213_060 0.2871808899 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002796_030 Hb_002796_030 Hb_011525_020 Hb_011525_020 Hb_002796_030--Hb_011525_020 Hb_002135_040 Hb_002135_040 Hb_002796_030--Hb_002135_040 Hb_126838_020 Hb_126838_020 Hb_002796_030--Hb_126838_020 Hb_003360_020 Hb_003360_020 Hb_002796_030--Hb_003360_020 Hb_003012_080 Hb_003012_080 Hb_002796_030--Hb_003012_080 Hb_003376_170 Hb_003376_170 Hb_002796_030--Hb_003376_170 Hb_011525_020--Hb_003376_170 Hb_005217_020 Hb_005217_020 Hb_011525_020--Hb_005217_020 Hb_001675_060 Hb_001675_060 Hb_011525_020--Hb_001675_060 Hb_004545_050 Hb_004545_050 Hb_011525_020--Hb_004545_050 Hb_000441_230 Hb_000441_230 Hb_011525_020--Hb_000441_230 Hb_011525_020--Hb_003360_020 Hb_018247_010 Hb_018247_010 Hb_002135_040--Hb_018247_010 Hb_004098_030 Hb_004098_030 Hb_002135_040--Hb_004098_030 Hb_002135_040--Hb_126838_020 Hb_070820_010 Hb_070820_010 Hb_002135_040--Hb_070820_010 Hb_002135_040--Hb_011525_020 Hb_000707_070 Hb_000707_070 Hb_126838_020--Hb_000707_070 Hb_003859_010 Hb_003859_010 Hb_126838_020--Hb_003859_010 Hb_126838_020--Hb_011525_020 Hb_126838_020--Hb_003360_020 Hb_000213_060 Hb_000213_060 Hb_126838_020--Hb_000213_060 Hb_002253_110 Hb_002253_110 Hb_003360_020--Hb_002253_110 Hb_003360_020--Hb_000441_230 Hb_002506_110 Hb_002506_110 Hb_003360_020--Hb_002506_110 Hb_000580_060 Hb_000580_060 Hb_003360_020--Hb_000580_060 Hb_000033_060 Hb_000033_060 Hb_003360_020--Hb_000033_060 Hb_010290_020 Hb_010290_020 Hb_003360_020--Hb_010290_020 Hb_003012_080--Hb_003360_020 Hb_003012_080--Hb_002253_110 Hb_003012_080--Hb_011525_020 Hb_000563_280 Hb_000563_280 Hb_003012_080--Hb_000563_280 Hb_003012_080--Hb_000580_060 Hb_064201_010 Hb_064201_010 Hb_003376_170--Hb_064201_010 Hb_003376_170--Hb_005217_020 Hb_005016_150 Hb_005016_150 Hb_003376_170--Hb_005016_150 Hb_000352_130 Hb_000352_130 Hb_003376_170--Hb_000352_130 Hb_000454_030 Hb_000454_030 Hb_003376_170--Hb_000454_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.367941 0.11395 0 0.0808431 0.298576 0.754755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.281357 0 0 0 0

CAGE analysis