Hb_002798_020

Information

Type -
Description -
Location Contig2798: 19588-24534
Sequence    

Annotation

kegg
ID vvi:100243269
description uncharacterized LOC100243269
nr
ID XP_012089320.1
description PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23542 PE=4 SV=1
Gene Ontology
ID GO:0031969
description chloroplast j-like domain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29138: 19681-24406 , PASA_asmbl_29139: 23316-23676
cDNA
(Sanger)
(ID:Location)		 030_N08.ab1: 19681-22997

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002798_020 0.0 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
2 Hb_007065_010 0.0530982015 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
3 Hb_007576_170 0.0625748955 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000265_050 0.0638872685 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
5 Hb_003226_100 0.0651706062 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
6 Hb_004127_020 0.0662178375 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
7 Hb_002056_050 0.0681480908 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
8 Hb_000836_470 0.0702975218 - - -
9 Hb_000840_180 0.0704045392 - - protein BOLA2 [Jatropha curcas]
10 Hb_004459_040 0.0728657352 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
11 Hb_000676_160 0.0740277811 - - folate carrier protein, putative [Ricinus communis]
12 Hb_004157_030 0.0748313893 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
13 Hb_000169_040 0.0751069998 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
14 Hb_000920_110 0.0764036373 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
15 Hb_003540_240 0.0781523368 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
16 Hb_006541_010 0.0807766025 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
17 Hb_033153_060 0.0820830327 - - Transcription elongation factor, putative [Ricinus communis]
18 Hb_087749_010 0.0833356613 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
19 Hb_000996_140 0.0850719275 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
20 Hb_174865_010 0.0860527205 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_002798_020 Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_000735_090 Hb_000735_090 Hb_007065_010--Hb_000735_090 Hb_000016_080 Hb_000016_080 Hb_007065_010--Hb_000016_080 Hb_002613_020 Hb_002613_020 Hb_007065_010--Hb_002613_020 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_004459_040 Hb_004459_040 Hb_007576_170--Hb_004459_040 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_033153_060 Hb_033153_060 Hb_007576_170--Hb_033153_060 Hb_006541_010 Hb_006541_010 Hb_007576_170--Hb_006541_010 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_000265_050--Hb_004127_020 Hb_005063_050 Hb_005063_050 Hb_000265_050--Hb_005063_050 Hb_000136_170 Hb_000136_170 Hb_000265_050--Hb_000136_170 Hb_003893_050 Hb_003893_050 Hb_000265_050--Hb_003893_050 Hb_000265_050--Hb_004459_040 Hb_000920_110 Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.75338 3.41149 8.45462 8.69175 7.91558 10.0248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7832 30.9218 10.7107 7.59565 9.53873

CAGE analysis