Hb_002798_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig2798: 36839-44224
Sequence    

Annotation

kegg
ID rcu:RCOM_0609050
description cell division control protein, putative
nr
ID XP_002521973.1
description cell division control protein, putative [Ricinus communis]
swissprot
ID P92948
description Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2
trembl
ID B9S7K4
description Cell division control protein, putative OS=Ricinus communis GN=RCOM_0609050 PE=4 SV=1
Gene Ontology
ID GO:0003677
description cell division cycle 5-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29140: 36640-44475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002798_040 0.0 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
2 Hb_004452_100 0.0478544349 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
3 Hb_000100_070 0.0640944096 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
4 Hb_001366_040 0.0677456158 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
5 Hb_000244_250 0.0715948936 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
6 Hb_011318_010 0.0767510614 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
7 Hb_010931_080 0.0768309583 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
8 Hb_004934_090 0.0769686772 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
9 Hb_000915_050 0.0775950748 - - conserved hypothetical protein [Ricinus communis]
10 Hb_028487_110 0.0781834133 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
11 Hb_005977_090 0.0800522517 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
12 Hb_000184_110 0.0815964626 - - hypothetical protein F383_18769 [Gossypium arboreum]
13 Hb_001638_250 0.0832956071 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
14 Hb_000184_130 0.0833200203 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
15 Hb_002400_180 0.0837230039 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003362_040 0.0838742492 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
17 Hb_001789_210 0.0862160714 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
18 Hb_000510_200 0.0864609239 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_000789_080 0.0870776381 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
20 Hb_007586_030 0.0879202606 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002798_040 Hb_002798_040 Hb_004452_100 Hb_004452_100 Hb_002798_040--Hb_004452_100 Hb_000100_070 Hb_000100_070 Hb_002798_040--Hb_000100_070 Hb_001366_040 Hb_001366_040 Hb_002798_040--Hb_001366_040 Hb_000244_250 Hb_000244_250 Hb_002798_040--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_004452_100--Hb_001366_040 Hb_004452_100--Hb_011318_010 Hb_004452_100--Hb_000244_250 Hb_002039_010 Hb_002039_010 Hb_004452_100--Hb_002039_010 Hb_000184_110 Hb_000184_110 Hb_004452_100--Hb_000184_110 Hb_108216_040 Hb_108216_040 Hb_000100_070--Hb_108216_040 Hb_007590_080 Hb_007590_080 Hb_000100_070--Hb_007590_080 Hb_002400_180 Hb_002400_180 Hb_000100_070--Hb_002400_180 Hb_000640_320 Hb_000640_320 Hb_000100_070--Hb_000640_320 Hb_002007_350 Hb_002007_350 Hb_000100_070--Hb_002007_350 Hb_004055_040 Hb_004055_040 Hb_001366_040--Hb_004055_040 Hb_031754_010 Hb_031754_010 Hb_001366_040--Hb_031754_010 Hb_001504_160 Hb_001504_160 Hb_001366_040--Hb_001504_160 Hb_000327_310 Hb_000327_310 Hb_001366_040--Hb_000327_310 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_011318_010--Hb_000005_380 Hb_090804_010 Hb_090804_010 Hb_011318_010--Hb_090804_010 Hb_011318_010--Hb_000244_250 Hb_002054_040 Hb_002054_040 Hb_011318_010--Hb_002054_040 Hb_002942_160 Hb_002942_160 Hb_010931_080--Hb_002942_160 Hb_004370_030 Hb_004370_030 Hb_010931_080--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_010931_080--Hb_000789_080 Hb_026099_010 Hb_026099_010 Hb_010931_080--Hb_026099_010 Hb_004934_090 Hb_004934_090 Hb_010931_080--Hb_004934_090 Hb_010931_080--Hb_003362_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.1288 31.0122 9.21804 11.925 49.2129 62.13
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.4313 19.5731 35.3181 27.2933 23.5231

CAGE analysis