Hb_002798_080

Information

Type -
Description -
Location Contig2798: 89518-95496
Sequence    

Annotation

kegg
ID pmum:103337005
description uncharacterized LOC103337005
nr
ID CAN63777.1
description hypothetical protein VITISV_043745 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BS59
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043745 PE=4 SV=1
Gene Ontology
ID GO:0003676
description opie3 pol protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002798_080 0.0 - - hypothetical protein VITISV_043745 [Vitis vinifera]
2 Hb_006787_070 0.1174573877 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
3 Hb_001497_040 0.1615434715 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
4 Hb_001345_040 0.1646237728 - - hypothetical protein VITISV_015004 [Vitis vinifera]
5 Hb_006588_020 0.182207237 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_188075_010 0.1827747429 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
7 Hb_004312_020 0.1831514563 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000352_060 0.1842792258 - - RNA-directed DNA polymerase [Arachis hypogaea]
9 Hb_001468_040 0.1854729476 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
10 Hb_013420_060 0.1858118872 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
11 Hb_020831_070 0.1865643217 - - hypothetical protein VITISV_027174 [Vitis vinifera]
12 Hb_002400_080 0.187212706 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_004520_010 0.1875934367 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
14 Hb_002615_080 0.1888723782 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
15 Hb_001652_130 0.1891905853 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
16 Hb_032260_110 0.1897650372 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005092_090 0.1911788089 - - cold regulated protein [Manihot esculenta]
18 Hb_000092_060 0.1932125362 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
19 Hb_116784_020 0.19323665 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
20 Hb_000820_100 0.1933092246 - - RNA-directed DNA polymerase [Arachis hypogaea]

Gene co-expression network

sample Hb_002798_080 Hb_002798_080 Hb_006787_070 Hb_006787_070 Hb_002798_080--Hb_006787_070 Hb_001497_040 Hb_001497_040 Hb_002798_080--Hb_001497_040 Hb_001345_040 Hb_001345_040 Hb_002798_080--Hb_001345_040 Hb_006588_020 Hb_006588_020 Hb_002798_080--Hb_006588_020 Hb_188075_010 Hb_188075_010 Hb_002798_080--Hb_188075_010 Hb_004312_020 Hb_004312_020 Hb_002798_080--Hb_004312_020 Hb_006787_070--Hb_001345_040 Hb_006787_070--Hb_188075_010 Hb_012796_030 Hb_012796_030 Hb_006787_070--Hb_012796_030 Hb_005092_090 Hb_005092_090 Hb_006787_070--Hb_005092_090 Hb_006787_070--Hb_004312_020 Hb_032260_110 Hb_032260_110 Hb_001497_040--Hb_032260_110 Hb_002400_080 Hb_002400_080 Hb_001497_040--Hb_002400_080 Hb_002615_080 Hb_002615_080 Hb_001497_040--Hb_002615_080 Hb_002276_030 Hb_002276_030 Hb_001497_040--Hb_002276_030 Hb_006827_030 Hb_006827_030 Hb_001497_040--Hb_006827_030 Hb_001345_040--Hb_006588_020 Hb_001345_040--Hb_188075_010 Hb_001345_040--Hb_005092_090 Hb_000352_060 Hb_000352_060 Hb_001345_040--Hb_000352_060 Hb_001345_040--Hb_004312_020 Hb_006588_020--Hb_005092_090 Hb_001866_100 Hb_001866_100 Hb_006588_020--Hb_001866_100 Hb_007035_010 Hb_007035_010 Hb_006588_020--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006588_020--Hb_000049_170 Hb_000009_390 Hb_000009_390 Hb_006588_020--Hb_000009_390 Hb_027337_130 Hb_027337_130 Hb_188075_010--Hb_027337_130 Hb_001652_130 Hb_001652_130 Hb_188075_010--Hb_001652_130 Hb_008461_070 Hb_008461_070 Hb_188075_010--Hb_008461_070 Hb_000574_340 Hb_000574_340 Hb_188075_010--Hb_000574_340 Hb_000033_010 Hb_000033_010 Hb_188075_010--Hb_000033_010 Hb_008834_010 Hb_008834_010 Hb_004312_020--Hb_008834_010 Hb_001366_260 Hb_001366_260 Hb_004312_020--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_004312_020--Hb_001468_040 Hb_035651_010 Hb_035651_010 Hb_004312_020--Hb_035651_010 Hb_004312_020--Hb_188075_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00630093 0.0124589 0.0142357 0.00938698 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0178356 0.0719831

CAGE analysis