Hb_002799_040

Information

Type -
Description -
Location Contig2799: 22920-26388
Sequence    

Annotation

kegg
ID vvi:100264130
description probable 26S proteasome non-ATPase regulatory subunit 3
nr
ID XP_002279715.1
description PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
swissprot
ID Q06364
description Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2
trembl
ID F6I0Z2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02590 PE=4 SV=1
Gene Ontology
ID GO:0000502
description probable 26s proteasome non-atpase regulatory subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29148: 23007-26339 , PASA_asmbl_29149: 24807-25030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002799_040 0.0 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
2 Hb_001504_330 0.0796025087 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
3 Hb_000393_020 0.0859519033 - - lipid binding protein, putative [Ricinus communis]
4 Hb_031910_020 0.0933709995 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
5 Hb_002119_130 0.0955895457 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
6 Hb_001507_040 0.0977383884 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000603_080 0.1025454765 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
8 Hb_000454_090 0.1046202219 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
9 Hb_001314_070 0.1068499936 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003360_040 0.1075715169 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
11 Hb_020805_130 0.1078630038 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_001635_190 0.1104617992 - - RNA m5u methyltransferase, putative [Ricinus communis]
13 Hb_000008_440 0.1119067684 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
14 Hb_000165_160 0.1139572023 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
15 Hb_004679_050 0.1149608384 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
16 Hb_002799_070 0.1158531641 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
17 Hb_011218_090 0.116056459 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
18 Hb_004993_060 0.1162871393 - - -
19 Hb_000027_260 0.1174216487 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
20 Hb_004078_040 0.1175597029 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002799_040 Hb_002799_040 Hb_001504_330 Hb_001504_330 Hb_002799_040--Hb_001504_330 Hb_000393_020 Hb_000393_020 Hb_002799_040--Hb_000393_020 Hb_031910_020 Hb_031910_020 Hb_002799_040--Hb_031910_020 Hb_002119_130 Hb_002119_130 Hb_002799_040--Hb_002119_130 Hb_001507_040 Hb_001507_040 Hb_002799_040--Hb_001507_040 Hb_000603_080 Hb_000603_080 Hb_002799_040--Hb_000603_080 Hb_001504_330--Hb_000603_080 Hb_000007_140 Hb_000007_140 Hb_001504_330--Hb_000007_140 Hb_001504_330--Hb_031910_020 Hb_000367_260 Hb_000367_260 Hb_001504_330--Hb_000367_260 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040 Hb_004117_260 Hb_004117_260 Hb_000393_020--Hb_004117_260 Hb_004078_040 Hb_004078_040 Hb_000393_020--Hb_004078_040 Hb_000349_260 Hb_000349_260 Hb_000393_020--Hb_000349_260 Hb_001300_150 Hb_001300_150 Hb_000393_020--Hb_001300_150 Hb_000928_070 Hb_000928_070 Hb_000393_020--Hb_000928_070 Hb_001314_070 Hb_001314_070 Hb_000393_020--Hb_001314_070 Hb_004993_060 Hb_004993_060 Hb_031910_020--Hb_004993_060 Hb_031910_020--Hb_000603_080 Hb_031910_020--Hb_001314_070 Hb_000549_040 Hb_000549_040 Hb_031910_020--Hb_000549_040 Hb_007218_120 Hb_007218_120 Hb_002119_130--Hb_007218_120 Hb_002119_130--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_002119_130--Hb_000920_200 Hb_001218_030 Hb_001218_030 Hb_002119_130--Hb_001218_030 Hb_000173_410 Hb_000173_410 Hb_002119_130--Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_002119_130--Hb_000454_090 Hb_020805_130 Hb_020805_130 Hb_001507_040--Hb_020805_130 Hb_008616_070 Hb_008616_070 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_000603_080--Hb_001314_070 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1241 54.1075 49.1058 54.4114 30.6863 22.0153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.2316 59.3596 117.261 55.6064 50.7357

CAGE analysis