Hb_002799_070

Information

Type -
Description -
Location Contig2799: 87919-103148
Sequence    

Annotation

kegg
ID mdm:103444915
description RNA-binding protein 39-like
nr
ID XP_012077730.1
description PREDICTED: RNA-binding protein 39 [Jatropha curcas]
swissprot
ID Q86U06
description Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
trembl
ID A0A067KB07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13089 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna-binding protein 39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29151: 87943-103223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002799_070 0.0 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
2 Hb_000327_180 0.0708573622 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
3 Hb_000165_160 0.077047845 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
4 Hb_001489_080 0.0782394427 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_001541_120 0.0857667918 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
6 Hb_006420_080 0.0870119024 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_001123_040 0.0883488795 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
8 Hb_000603_080 0.089429072 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
9 Hb_001195_200 0.0931665221 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
10 Hb_003768_030 0.0940634038 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
11 Hb_007416_060 0.0952747099 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
12 Hb_000982_080 0.0964507602 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
13 Hb_001314_070 0.096687001 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005183_120 0.0969882375 - - protein translocase, putative [Ricinus communis]
15 Hb_000977_110 0.0984351832 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
16 Hb_001766_050 0.0988517554 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
17 Hb_000783_020 0.099754796 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
18 Hb_000928_070 0.1002962932 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_001507_040 0.1022032027 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000120_080 0.1040210887 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]

Gene co-expression network

sample Hb_002799_070 Hb_002799_070 Hb_000327_180 Hb_000327_180 Hb_002799_070--Hb_000327_180 Hb_000165_160 Hb_000165_160 Hb_002799_070--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_002799_070--Hb_001489_080 Hb_001541_120 Hb_001541_120 Hb_002799_070--Hb_001541_120 Hb_006420_080 Hb_006420_080 Hb_002799_070--Hb_006420_080 Hb_001123_040 Hb_001123_040 Hb_002799_070--Hb_001123_040 Hb_003847_030 Hb_003847_030 Hb_000327_180--Hb_003847_030 Hb_001195_200 Hb_001195_200 Hb_000327_180--Hb_001195_200 Hb_005054_110 Hb_005054_110 Hb_000327_180--Hb_005054_110 Hb_003376_250 Hb_003376_250 Hb_000327_180--Hb_003376_250 Hb_000603_080 Hb_000603_080 Hb_000327_180--Hb_000603_080 Hb_001507_040 Hb_001507_040 Hb_000165_160--Hb_001507_040 Hb_005183_120 Hb_005183_120 Hb_000165_160--Hb_005183_120 Hb_000445_040 Hb_000445_040 Hb_000165_160--Hb_000445_040 Hb_000783_020 Hb_000783_020 Hb_000165_160--Hb_000783_020 Hb_000334_150 Hb_000334_150 Hb_000165_160--Hb_000334_150 Hb_000985_030 Hb_000985_030 Hb_001489_080--Hb_000985_030 Hb_004934_100 Hb_004934_100 Hb_001489_080--Hb_004934_100 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_002169_040 Hb_002169_040 Hb_001489_080--Hb_002169_040 Hb_000928_070 Hb_000928_070 Hb_001541_120--Hb_000928_070 Hb_001766_050 Hb_001766_050 Hb_001541_120--Hb_001766_050 Hb_006740_030 Hb_006740_030 Hb_001541_120--Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_001541_120--Hb_000140_090 Hb_008421_020 Hb_008421_020 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_015778_010 Hb_015778_010 Hb_006420_080--Hb_015778_010 Hb_010883_050 Hb_010883_050 Hb_006420_080--Hb_010883_050 Hb_001902_140 Hb_001902_140 Hb_006420_080--Hb_001902_140 Hb_000982_080 Hb_000982_080 Hb_006420_080--Hb_000982_080 Hb_006420_080--Hb_001489_080 Hb_003697_040 Hb_003697_040 Hb_006420_080--Hb_003697_040 Hb_004157_050 Hb_004157_050 Hb_001123_040--Hb_004157_050 Hb_001218_030 Hb_001218_030 Hb_001123_040--Hb_001218_030 Hb_000069_720 Hb_000069_720 Hb_001123_040--Hb_000069_720 Hb_001123_040--Hb_004934_100 Hb_000035_180 Hb_000035_180 Hb_001123_040--Hb_000035_180 Hb_001828_150 Hb_001828_150 Hb_001123_040--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4674 11.0626 13.7718 12.5098 8.00294 11.232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5458 18.9252 26.7268 18.4768 22.7623

CAGE analysis