Hb_002799_110

Information

Type -
Description -
Location Contig2799: 169609-175922
Sequence    

Annotation

kegg
ID rcu:RCOM_0977500
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012077728.1
description PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
swissprot
ID Q5Z8P0
description Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1
trembl
ID A0A067KNC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13086 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 60

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29152: 169622-175900 , PASA_asmbl_29153: 174278-174804
cDNA
(Sanger)
(ID:Location)		 035_H24.ab1: 169744-171159

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002799_110 0.0 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
2 Hb_000614_220 0.0607448362 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
3 Hb_027654_060 0.0749208894 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
4 Hb_000614_160 0.0787318833 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
5 Hb_003086_150 0.0798518548 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
6 Hb_000260_030 0.0828208378 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
7 Hb_002490_020 0.0837194791 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
8 Hb_000205_090 0.0859414246 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
9 Hb_000827_050 0.0860070246 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_003053_020 0.0860634442 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
11 Hb_000985_030 0.086206298 - - PREDICTED: RRP15-like protein [Populus euphratica]
12 Hb_032264_070 0.08714967 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
13 Hb_001268_420 0.0876513213 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
14 Hb_002600_090 0.0879099604 - - ATP binding protein, putative [Ricinus communis]
15 Hb_029879_130 0.0884000863 - - Derlin-2, putative [Ricinus communis]
16 Hb_050514_010 0.0890301809 - - hypothetical protein 29 [Hevea brasiliensis]
17 Hb_000962_040 0.0905622391 - - heat shock protein binding protein, putative [Ricinus communis]
18 Hb_007904_260 0.0909490373 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
19 Hb_002871_190 0.0916257195 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
20 Hb_004109_170 0.0927198715 - - PREDICTED: probable ribokinase [Jatropha curcas]

Gene co-expression network

sample Hb_002799_110 Hb_002799_110 Hb_000614_220 Hb_000614_220 Hb_002799_110--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_002799_110--Hb_027654_060 Hb_000614_160 Hb_000614_160 Hb_002799_110--Hb_000614_160 Hb_003086_150 Hb_003086_150 Hb_002799_110--Hb_003086_150 Hb_000260_030 Hb_000260_030 Hb_002799_110--Hb_000260_030 Hb_002490_020 Hb_002490_020 Hb_002799_110--Hb_002490_020 Hb_000614_220--Hb_027654_060 Hb_000614_220--Hb_000614_160 Hb_000510_290 Hb_000510_290 Hb_000614_220--Hb_000510_290 Hb_012675_050 Hb_012675_050 Hb_000614_220--Hb_012675_050 Hb_012114_070 Hb_012114_070 Hb_000614_220--Hb_012114_070 Hb_082609_010 Hb_082609_010 Hb_027654_060--Hb_082609_010 Hb_000962_040 Hb_000962_040 Hb_027654_060--Hb_000962_040 Hb_003020_220 Hb_003020_220 Hb_027654_060--Hb_003020_220 Hb_028486_030 Hb_028486_030 Hb_027654_060--Hb_028486_030 Hb_007389_010 Hb_007389_010 Hb_000614_160--Hb_007389_010 Hb_000614_160--Hb_000260_030 Hb_005496_140 Hb_005496_140 Hb_000614_160--Hb_005496_140 Hb_012019_010 Hb_012019_010 Hb_000614_160--Hb_012019_010 Hb_002046_180 Hb_002046_180 Hb_000614_160--Hb_002046_180 Hb_000827_050 Hb_000827_050 Hb_003086_150--Hb_000827_050 Hb_000236_040 Hb_000236_040 Hb_003086_150--Hb_000236_040 Hb_050514_010 Hb_050514_010 Hb_003086_150--Hb_050514_010 Hb_001314_070 Hb_001314_070 Hb_003086_150--Hb_001314_070 Hb_000529_170 Hb_000529_170 Hb_003086_150--Hb_000529_170 Hb_000260_030--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000260_030--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_000260_030--Hb_001300_150 Hb_000329_320 Hb_000329_320 Hb_002490_020--Hb_000329_320 Hb_004195_270 Hb_004195_270 Hb_002490_020--Hb_004195_270 Hb_003747_200 Hb_003747_200 Hb_002490_020--Hb_003747_200 Hb_010222_020 Hb_010222_020 Hb_002490_020--Hb_010222_020 Hb_002141_030 Hb_002141_030 Hb_002490_020--Hb_002141_030 Hb_002600_090 Hb_002600_090 Hb_002490_020--Hb_002600_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1585 14.1304 24.2075 15.7372 13.9766 19.8401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1963 43.3292 43.8144 18.3937 29.7599

CAGE analysis