Hb_002799_120

Information

Type -
Description -
Location Contig2799: 232167-236524
Sequence    

Annotation

kegg
ID rcu:RCOM_0977480
description hypothetical protein
nr
ID XP_011046654.1
description PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9S5K1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0977480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29155: 232343-232704 , PASA_asmbl_29156: 233122-233510 , PASA_asmbl_29157: 234209-234438 , PASA_asmbl_29158: 235741-236096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002799_120 0.0 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
2 Hb_007317_100 0.0997823531 - - Peflin, putative [Ricinus communis]
3 Hb_006649_100 0.1132069636 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_000264_160 0.1236520071 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
5 Hb_000347_170 0.1251104211 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_005375_100 0.1281824239 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
7 Hb_000574_380 0.1304733452 - - hydrolase, putative [Ricinus communis]
8 Hb_004223_120 0.1437433036 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
9 Hb_003411_070 0.1442542983 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
10 Hb_002843_130 0.1452124871 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
11 Hb_000431_080 0.1456223857 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
12 Hb_000173_330 0.1464614689 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
13 Hb_000120_260 0.1485869155 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
14 Hb_009293_030 0.1494661029 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
15 Hb_005197_030 0.1503976146 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH71-like isoform X2 [Populus euphratica]
16 Hb_031862_190 0.1510294507 - - -
17 Hb_000152_650 0.1544890991 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_001123_340 0.1553003039 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
19 Hb_000187_100 0.1559827415 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
20 Hb_001439_160 0.158660283 - - PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]

Gene co-expression network

sample Hb_002799_120 Hb_002799_120 Hb_007317_100 Hb_007317_100 Hb_002799_120--Hb_007317_100 Hb_006649_100 Hb_006649_100 Hb_002799_120--Hb_006649_100 Hb_000264_160 Hb_000264_160 Hb_002799_120--Hb_000264_160 Hb_000347_170 Hb_000347_170 Hb_002799_120--Hb_000347_170 Hb_005375_100 Hb_005375_100 Hb_002799_120--Hb_005375_100 Hb_000574_380 Hb_000574_380 Hb_002799_120--Hb_000574_380 Hb_002843_130 Hb_002843_130 Hb_007317_100--Hb_002843_130 Hb_000483_270 Hb_000483_270 Hb_007317_100--Hb_000483_270 Hb_000152_650 Hb_000152_650 Hb_007317_100--Hb_000152_650 Hb_007317_100--Hb_000264_160 Hb_000961_060 Hb_000961_060 Hb_007317_100--Hb_000961_060 Hb_003411_070 Hb_003411_070 Hb_006649_100--Hb_003411_070 Hb_006649_100--Hb_005375_100 Hb_009293_030 Hb_009293_030 Hb_006649_100--Hb_009293_030 Hb_004223_120 Hb_004223_120 Hb_006649_100--Hb_004223_120 Hb_000173_330 Hb_000173_330 Hb_006649_100--Hb_000173_330 Hb_003702_010 Hb_003702_010 Hb_006649_100--Hb_003702_010 Hb_000264_160--Hb_000152_650 Hb_001123_340 Hb_001123_340 Hb_000264_160--Hb_001123_340 Hb_000431_080 Hb_000431_080 Hb_000264_160--Hb_000431_080 Hb_003077_010 Hb_003077_010 Hb_000264_160--Hb_003077_010 Hb_005365_040 Hb_005365_040 Hb_000264_160--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000264_160--Hb_104014_010 Hb_000347_170--Hb_004223_120 Hb_000347_170--Hb_006649_100 Hb_000347_170--Hb_003411_070 Hb_031862_190 Hb_031862_190 Hb_000347_170--Hb_031862_190 Hb_000347_170--Hb_009293_030 Hb_000187_100 Hb_000187_100 Hb_000347_170--Hb_000187_100 Hb_008195_100 Hb_008195_100 Hb_005375_100--Hb_008195_100 Hb_132840_060 Hb_132840_060 Hb_005375_100--Hb_132840_060 Hb_005375_100--Hb_000173_330 Hb_155874_020 Hb_155874_020 Hb_005375_100--Hb_155874_020 Hb_008032_010 Hb_008032_010 Hb_005375_100--Hb_008032_010 Hb_000574_380--Hb_004223_120 Hb_000574_380--Hb_000347_170 Hb_030565_020 Hb_030565_020 Hb_000574_380--Hb_030565_020 Hb_000574_380--Hb_000264_160 Hb_000574_380--Hb_000431_080 Hb_001401_050 Hb_001401_050 Hb_000574_380--Hb_001401_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0203739 0.034557 3.63358 0.383146 0 0.00867346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0619968 0.0813039 0.0308989 0.0387874 0.895492

CAGE analysis