Hb_002804_010

Information

Type -
Description -
Location Contig2804: 14158-20138
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03570g
description POPTRDRAFT_1088417; hypothetical protein
nr
ID XP_012065026.1
description PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
swissprot
ID Q8GUH1
description U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2
trembl
ID A0A067LJ25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05696 PE=4 SV=1
Gene Ontology
ID GO:0004672
description u-box domain-containing protein 33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29267: 13994-16625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002804_010 0.0 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
2 Hb_005288_050 0.0763691442 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
3 Hb_002387_040 0.0903150809 - - protein transporter, putative [Ricinus communis]
4 Hb_000418_050 0.0985852388 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
5 Hb_024714_070 0.1019918391 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
6 Hb_000753_140 0.1067189819 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
7 Hb_001951_240 0.1069399949 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
8 Hb_001514_240 0.1074522643 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
9 Hb_019863_060 0.1084015908 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
10 Hb_000613_220 0.1091000882 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
11 Hb_002482_030 0.110784283 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
12 Hb_017914_010 0.1127089594 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
13 Hb_002248_120 0.1128333794 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_187005_010 0.1158142836 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
15 Hb_007416_260 0.1166390852 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
16 Hb_003725_010 0.1184054911 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
17 Hb_006794_020 0.1189373919 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
18 Hb_000227_320 0.1205549577 - - unnamed protein product [Vitis vinifera]
19 Hb_121089_020 0.1208479283 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
20 Hb_013358_060 0.1215678425 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]

Gene co-expression network

sample Hb_002804_010 Hb_002804_010 Hb_005288_050 Hb_005288_050 Hb_002804_010--Hb_005288_050 Hb_002387_040 Hb_002387_040 Hb_002804_010--Hb_002387_040 Hb_000418_050 Hb_000418_050 Hb_002804_010--Hb_000418_050 Hb_024714_070 Hb_024714_070 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240 Hb_005288_050--Hb_002387_040 Hb_006794_020 Hb_006794_020 Hb_005288_050--Hb_006794_020 Hb_000227_320 Hb_000227_320 Hb_005288_050--Hb_000227_320 Hb_033363_010 Hb_033363_010 Hb_005288_050--Hb_033363_010 Hb_000270_700 Hb_000270_700 Hb_005288_050--Hb_000270_700 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_002387_040--Hb_024714_070 Hb_002387_040--Hb_000418_050 Hb_000418_050--Hb_000270_700 Hb_001133_090 Hb_001133_090 Hb_000418_050--Hb_001133_090 Hb_000421_110 Hb_000421_110 Hb_000418_050--Hb_000421_110 Hb_005885_030 Hb_005885_030 Hb_000418_050--Hb_005885_030 Hb_000261_280 Hb_000261_280 Hb_000418_050--Hb_000261_280 Hb_002107_100 Hb_002107_100 Hb_000418_050--Hb_002107_100 Hb_003725_010 Hb_003725_010 Hb_024714_070--Hb_003725_010 Hb_017914_010 Hb_017914_010 Hb_024714_070--Hb_017914_010 Hb_003417_030 Hb_003417_030 Hb_024714_070--Hb_003417_030 Hb_000015_090 Hb_000015_090 Hb_024714_070--Hb_000015_090 Hb_013358_060 Hb_013358_060 Hb_024714_070--Hb_013358_060 Hb_000318_410 Hb_000318_410 Hb_000753_140--Hb_000318_410 Hb_000086_640 Hb_000086_640 Hb_000753_140--Hb_000086_640 Hb_001386_020 Hb_001386_020 Hb_000753_140--Hb_001386_020 Hb_015807_080 Hb_015807_080 Hb_000753_140--Hb_015807_080 Hb_132840_020 Hb_132840_020 Hb_000753_140--Hb_132840_020 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001053_200 Hb_001053_200 Hb_001951_240--Hb_001053_200 Hb_000649_300 Hb_000649_300 Hb_001951_240--Hb_000649_300 Hb_002073_020 Hb_002073_020 Hb_001951_240--Hb_002073_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.927927 10.3693 7.32262 4.78588 1.17501 1.60131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15917 1.40846 0.665317 3.75976 5.07901

CAGE analysis