Hb_002804_030

Information

Type -
Description -
Location Contig2804: 35556-38955
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24620g
description POPTRDRAFT_797687; hypothetical protein
nr
ID XP_012065028.1
description PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
swissprot
ID Q9LQN6
description Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=2 SV=1
trembl
ID A0A067L726
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05698 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29270: 35508-39096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002804_030 0.0 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
2 Hb_000922_220 0.1180608924 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
3 Hb_000434_010 0.1431498458 - - PREDICTED: protein starmaker [Jatropha curcas]
4 Hb_001073_030 0.158469006 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
5 Hb_010921_020 0.1620074985 - - PREDICTED: cyclin-SDS [Jatropha curcas]
6 Hb_004875_010 0.1630134057 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
7 Hb_000631_140 0.1644338895 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
8 Hb_122273_020 0.1677849946 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
9 Hb_000991_050 0.1707213321 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
10 Hb_009674_080 0.1707706464 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
11 Hb_001409_050 0.1738592396 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001408_020 0.1786161059 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
13 Hb_012753_040 0.1791672574 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
14 Hb_004324_060 0.1822634522 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
15 Hb_172421_010 0.1826574093 - - cysteine protease [Hevea brasiliensis]
16 Hb_001079_030 0.1852597782 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
17 Hb_000015_160 0.1866043036 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
18 Hb_000359_220 0.1876759914 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
19 Hb_000320_460 0.1905310634 - - PREDICTED: uncharacterized protein LOC105650098 [Jatropha curcas]
20 Hb_002774_150 0.1912841571 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]

Gene co-expression network

sample Hb_002804_030 Hb_002804_030 Hb_000922_220 Hb_000922_220 Hb_002804_030--Hb_000922_220 Hb_000434_010 Hb_000434_010 Hb_002804_030--Hb_000434_010 Hb_001073_030 Hb_001073_030 Hb_002804_030--Hb_001073_030 Hb_010921_020 Hb_010921_020 Hb_002804_030--Hb_010921_020 Hb_004875_010 Hb_004875_010 Hb_002804_030--Hb_004875_010 Hb_000631_140 Hb_000631_140 Hb_002804_030--Hb_000631_140 Hb_000922_220--Hb_004875_010 Hb_122273_020 Hb_122273_020 Hb_000922_220--Hb_122273_020 Hb_000922_220--Hb_000434_010 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_172421_010 Hb_172421_010 Hb_000922_220--Hb_172421_010 Hb_000434_010--Hb_004875_010 Hb_005181_040 Hb_005181_040 Hb_000434_010--Hb_005181_040 Hb_009674_080 Hb_009674_080 Hb_000434_010--Hb_009674_080 Hb_003216_060 Hb_003216_060 Hb_000434_010--Hb_003216_060 Hb_000175_270 Hb_000175_270 Hb_001073_030--Hb_000175_270 Hb_000438_020 Hb_000438_020 Hb_001073_030--Hb_000438_020 Hb_000418_150 Hb_000418_150 Hb_001073_030--Hb_000418_150 Hb_001073_030--Hb_010921_020 Hb_000221_180 Hb_000221_180 Hb_001073_030--Hb_000221_180 Hb_001073_030--Hb_000922_220 Hb_010921_020--Hb_000922_220 Hb_010921_020--Hb_000175_270 Hb_000032_020 Hb_000032_020 Hb_010921_020--Hb_000032_020 Hb_005183_140 Hb_005183_140 Hb_010921_020--Hb_005183_140 Hb_000320_360 Hb_000320_360 Hb_010921_020--Hb_000320_360 Hb_014720_030 Hb_014720_030 Hb_004875_010--Hb_014720_030 Hb_004875_010--Hb_122273_020 Hb_000649_270 Hb_000649_270 Hb_004875_010--Hb_000649_270 Hb_002005_030 Hb_002005_030 Hb_004875_010--Hb_002005_030 Hb_005772_030 Hb_005772_030 Hb_004875_010--Hb_005772_030 Hb_000015_160 Hb_000015_160 Hb_000631_140--Hb_000015_160 Hb_012753_040 Hb_012753_040 Hb_000631_140--Hb_012753_040 Hb_000631_140--Hb_010921_020 Hb_000991_050 Hb_000991_050 Hb_000631_140--Hb_000991_050 Hb_000302_300 Hb_000302_300 Hb_000631_140--Hb_000302_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.833647 13.0843 5.32535 4.5871 5.61681 2.70832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0564361 0.133224 0.591876 4.33412 8.64114

CAGE analysis