Hb_002804_050

Information

Type -
Description -
Location Contig2804: 92614-96544
Sequence    

Annotation

kegg
ID rcu:RCOM_1238310
description hypothetical protein
nr
ID XP_012065031.1
description PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
swissprot
ID F4HSD5
description Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1
trembl
ID A0A067LAM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29272: 92047-93453 , PASA_asmbl_29273: 95769-96121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002804_050 0.0 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
2 Hb_006615_100 0.1289883556 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
3 Hb_001529_060 0.131252553 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
4 Hb_002849_080 0.1350531476 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
5 Hb_002783_050 0.136726545 - - zinc finger protein, putative [Ricinus communis]
6 Hb_003106_150 0.142112551 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
7 Hb_010128_070 0.1447961708 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_005038_020 0.1490781804 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_183510_010 0.1500862229 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
10 Hb_005122_060 0.1508852458 - - unnamed protein product [Vitis vinifera]
11 Hb_002843_050 0.1569146148 - - scab resistance family protein [Populus trichocarpa]
12 Hb_001377_050 0.1582349812 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_007680_020 0.1586717551 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_045046_010 0.1591486412 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
15 Hb_000281_010 0.1592426299 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
16 Hb_105085_010 0.1593787896 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
17 Hb_005144_040 0.1630147307 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
18 Hb_043668_010 0.1639322371 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000116_570 0.166361391 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
20 Hb_002078_420 0.1680666831 - - PREDICTED: F-box only protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_002804_050 Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_002804_050--Hb_006615_100 Hb_001529_060 Hb_001529_060 Hb_002804_050--Hb_001529_060 Hb_002849_080 Hb_002849_080 Hb_002804_050--Hb_002849_080 Hb_002783_050 Hb_002783_050 Hb_002804_050--Hb_002783_050 Hb_003106_150 Hb_003106_150 Hb_002804_050--Hb_003106_150 Hb_010128_070 Hb_010128_070 Hb_002804_050--Hb_010128_070 Hb_007680_020 Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_006615_100--Hb_010128_070 Hb_000281_010 Hb_000281_010 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_009178_020 Hb_009178_020 Hb_001529_060--Hb_009178_020 Hb_001009_290 Hb_001009_290 Hb_001529_060--Hb_001009_290 Hb_000685_080 Hb_000685_080 Hb_001529_060--Hb_000685_080 Hb_001529_060--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001529_060--Hb_148209_020 Hb_000317_150 Hb_000317_150 Hb_001529_060--Hb_000317_150 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_000116_570 Hb_000116_570 Hb_002783_050--Hb_000116_570 Hb_001247_230 Hb_001247_230 Hb_002783_050--Hb_001247_230 Hb_010883_080 Hb_010883_080 Hb_002783_050--Hb_010883_080 Hb_002783_050--Hb_006615_100 Hb_002783_050--Hb_000281_010 Hb_017075_030 Hb_017075_030 Hb_003106_150--Hb_017075_030 Hb_003106_150--Hb_010128_070 Hb_003106_150--Hb_002849_080 Hb_001157_180 Hb_001157_180 Hb_003106_150--Hb_001157_180 Hb_000504_160 Hb_000504_160 Hb_003106_150--Hb_000504_160 Hb_010128_090 Hb_010128_090 Hb_003106_150--Hb_010128_090 Hb_010128_070--Hb_000281_010 Hb_010128_070--Hb_017075_030 Hb_009620_030 Hb_009620_030 Hb_010128_070--Hb_009620_030 Hb_000116_460 Hb_000116_460 Hb_010128_070--Hb_000116_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.567 11.2869 1.48696 0.96619 9.26703 7.95643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83655 1.99013 3.51029 3.54337 0.808264

CAGE analysis