Hb_002805_020

Information

Type transcription factor
Description TF Family: SRS
Location Contig2805: 16452-18750
Sequence    

Annotation

kegg
ID rcu:RCOM_0067120
description transcription factor, putative
nr
ID XP_002530898.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q94CK9
description Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1
trembl
ID B9SY29
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0067120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29275: 16143-18720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_020 0.0 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
2 Hb_002486_010 0.1422201228 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
3 Hb_002660_060 0.197719428 - - PREDICTED: uncharacterized protein LOC105642215 [Jatropha curcas]
4 Hb_000671_160 0.2043891618 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_007747_180 0.2096946576 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
6 Hb_013766_010 0.2253587809 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
7 Hb_000297_020 0.2316907329 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
8 Hb_000868_100 0.2333016324 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
9 Hb_000671_170 0.2408255208 - - kinase, putative [Ricinus communis]
10 Hb_010506_010 0.2463866911 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
11 Hb_082182_010 0.2466965451 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
12 Hb_001079_020 0.2475363527 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
13 Hb_002284_190 0.25014008 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
14 Hb_027467_010 0.2513997735 - - hypothetical protein PRUPE_ppa004106mg [Prunus persica]
15 Hb_002774_110 0.2549819174 - - heat shock protein binding protein, putative [Ricinus communis]
16 Hb_000369_020 0.255516703 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
17 Hb_017170_030 0.2570760073 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
18 Hb_031862_040 0.2579852085 - - purine transporter, putative [Ricinus communis]
19 Hb_001123_100 0.2616138111 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
20 Hb_005162_100 0.2623879663 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002805_020 Hb_002805_020 Hb_002486_010 Hb_002486_010 Hb_002805_020--Hb_002486_010 Hb_002660_060 Hb_002660_060 Hb_002805_020--Hb_002660_060 Hb_000671_160 Hb_000671_160 Hb_002805_020--Hb_000671_160 Hb_007747_180 Hb_007747_180 Hb_002805_020--Hb_007747_180 Hb_013766_010 Hb_013766_010 Hb_002805_020--Hb_013766_010 Hb_000297_020 Hb_000297_020 Hb_002805_020--Hb_000297_020 Hb_002486_010--Hb_007747_180 Hb_082182_010 Hb_082182_010 Hb_002486_010--Hb_082182_010 Hb_002486_010--Hb_013766_010 Hb_007747_140 Hb_007747_140 Hb_002486_010--Hb_007747_140 Hb_000011_420 Hb_000011_420 Hb_002486_010--Hb_000011_420 Hb_002660_060--Hb_000671_160 Hb_000671_170 Hb_000671_170 Hb_002660_060--Hb_000671_170 Hb_002660_060--Hb_002486_010 Hb_000676_270 Hb_000676_270 Hb_002660_060--Hb_000676_270 Hb_000554_030 Hb_000554_030 Hb_002660_060--Hb_000554_030 Hb_000671_160--Hb_000671_170 Hb_000868_100 Hb_000868_100 Hb_000671_160--Hb_000868_100 Hb_002284_190 Hb_002284_190 Hb_000671_160--Hb_002284_190 Hb_000694_060 Hb_000694_060 Hb_000671_160--Hb_000694_060 Hb_007747_180--Hb_082182_010 Hb_002291_010 Hb_002291_010 Hb_007747_180--Hb_002291_010 Hb_007747_180--Hb_013766_010 Hb_007747_180--Hb_000297_020 Hb_001565_110 Hb_001565_110 Hb_013766_010--Hb_001565_110 Hb_001079_020 Hb_001079_020 Hb_013766_010--Hb_001079_020 Hb_002253_060 Hb_002253_060 Hb_013766_010--Hb_002253_060 Hb_013766_010--Hb_082182_010 Hb_017170_030 Hb_017170_030 Hb_000297_020--Hb_017170_030 Hb_007153_040 Hb_007153_040 Hb_000297_020--Hb_007153_040 Hb_105602_010 Hb_105602_010 Hb_000297_020--Hb_105602_010 Hb_004208_130 Hb_004208_130 Hb_000297_020--Hb_004208_130 Hb_162275_020 Hb_162275_020 Hb_000297_020--Hb_162275_020 Hb_000614_170 Hb_000614_170 Hb_000297_020--Hb_000614_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.824278 15.6393 0.800534 4.54201 0.0594639 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.00902 21.5234 19.5106 21.3431 5.18789

CAGE analysis