Hb_002805_070

Information

Type transcription factor
Description TF Family: HB
Location Contig2805: 70434-78159
Sequence    

Annotation

kegg
ID rcu:RCOM_0834050
description hypothetical protein
nr
ID XP_012065912.1
description PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
swissprot
ID P34684
description Homeobox protein lin-39 OS=Caenorhabditis elegans GN=lin-39 PE=2 SV=1
trembl
ID A0A067LGJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22826 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein 10 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29281: 72821-75931 , PASA_asmbl_29282: 77028-77707 , PASA_asmbl_29283: 77708-78202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_070 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
2 Hb_090804_010 0.0829767815 - - ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_039253_010 0.0847858437 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
4 Hb_011689_020 0.0879265567 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_001102_150 0.0897603519 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
6 Hb_005839_060 0.092757211 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
7 Hb_033834_060 0.0942253471 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
8 Hb_001484_120 0.0961049616 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
9 Hb_004204_020 0.0964885142 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
10 Hb_020719_030 0.097454585 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
11 Hb_007904_220 0.0993699084 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
12 Hb_000703_220 0.0999441809 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
13 Hb_005883_050 0.1000802877 - - PREDICTED: transportin-3 [Jatropha curcas]
14 Hb_025012_010 0.1009326265 - - PREDICTED: importin-4 [Vitis vinifera]
15 Hb_051407_010 0.1041032664 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
16 Hb_000103_180 0.1049655983 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
17 Hb_001691_120 0.1079846664 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
18 Hb_002027_270 0.1081999248 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
19 Hb_067345_010 0.1090805708 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
20 Hb_000179_020 0.109386462 - - amidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002805_070 Hb_002805_070 Hb_090804_010 Hb_090804_010 Hb_002805_070--Hb_090804_010 Hb_039253_010 Hb_039253_010 Hb_002805_070--Hb_039253_010 Hb_011689_020 Hb_011689_020 Hb_002805_070--Hb_011689_020 Hb_001102_150 Hb_001102_150 Hb_002805_070--Hb_001102_150 Hb_005839_060 Hb_005839_060 Hb_002805_070--Hb_005839_060 Hb_033834_060 Hb_033834_060 Hb_002805_070--Hb_033834_060 Hb_004204_020 Hb_004204_020 Hb_090804_010--Hb_004204_020 Hb_009627_010 Hb_009627_010 Hb_090804_010--Hb_009627_010 Hb_011318_010 Hb_011318_010 Hb_090804_010--Hb_011318_010 Hb_003362_040 Hb_003362_040 Hb_090804_010--Hb_003362_040 Hb_000206_250 Hb_000206_250 Hb_090804_010--Hb_000206_250 Hb_002023_020 Hb_002023_020 Hb_039253_010--Hb_002023_020 Hb_000364_150 Hb_000364_150 Hb_039253_010--Hb_000364_150 Hb_003656_140 Hb_003656_140 Hb_039253_010--Hb_003656_140 Hb_039253_010--Hb_001102_150 Hb_012286_050 Hb_012286_050 Hb_039253_010--Hb_012286_050 Hb_011689_020--Hb_005839_060 Hb_000703_220 Hb_000703_220 Hb_011689_020--Hb_000703_220 Hb_000284_110 Hb_000284_110 Hb_011689_020--Hb_000284_110 Hb_000166_110 Hb_000166_110 Hb_011689_020--Hb_000166_110 Hb_005679_050 Hb_005679_050 Hb_011689_020--Hb_005679_050 Hb_004732_020 Hb_004732_020 Hb_001102_150--Hb_004732_020 Hb_006114_030 Hb_006114_030 Hb_001102_150--Hb_006114_030 Hb_009117_030 Hb_009117_030 Hb_001102_150--Hb_009117_030 Hb_000424_240 Hb_000424_240 Hb_001102_150--Hb_000424_240 Hb_005839_060--Hb_000703_220 Hb_005839_060--Hb_000166_110 Hb_005839_060--Hb_004204_020 Hb_009133_010 Hb_009133_010 Hb_005839_060--Hb_009133_010 Hb_003673_060 Hb_003673_060 Hb_005839_060--Hb_003673_060 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_004689_050 Hb_004689_050 Hb_033834_060--Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_033834_060--Hb_004429_100 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7258 4.54523 4.87221 6.99687 16.0194 30.3437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6056 8.96379 13.8363 17.171 6.17519

CAGE analysis