Hb_002805_090

Information

Type -
Description -
Location Contig2805: 86732-99411
Sequence    

Annotation

kegg
ID rcu:RCOM_0833820
description Ran GTPase binding protein, putative
nr
ID XP_002527043.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9SM24
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0833820 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29284: 86479-99491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_090 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_002311_130 0.0677302287 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
3 Hb_005116_140 0.0784809114 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
4 Hb_000066_040 0.085768873 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
5 Hb_001998_220 0.0955544571 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
6 Hb_000025_500 0.0966785361 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_011174_080 0.0967799503 - - PREDICTED: sulfite oxidase [Jatropha curcas]
8 Hb_001473_170 0.0971600554 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
9 Hb_010381_020 0.098065743 - - Endosomal P24A protein precursor, putative [Ricinus communis]
10 Hb_102763_010 0.1019989408 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
11 Hb_001235_130 0.1034606211 - - -
12 Hb_001105_130 0.1036301971 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
13 Hb_007313_040 0.1038783782 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
14 Hb_030312_030 0.1058585594 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
15 Hb_004943_040 0.107520574 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
16 Hb_000157_140 0.1075837076 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_003006_080 0.1080373679 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_001221_300 0.1110208475 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
19 Hb_004041_030 0.1147042594 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
20 Hb_002400_060 0.115191375 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]

Gene co-expression network

sample Hb_002805_090 Hb_002805_090 Hb_002311_130 Hb_002311_130 Hb_002805_090--Hb_002311_130 Hb_005116_140 Hb_005116_140 Hb_002805_090--Hb_005116_140 Hb_000066_040 Hb_000066_040 Hb_002805_090--Hb_000066_040 Hb_001998_220 Hb_001998_220 Hb_002805_090--Hb_001998_220 Hb_000025_500 Hb_000025_500 Hb_002805_090--Hb_000025_500 Hb_011174_080 Hb_011174_080 Hb_002805_090--Hb_011174_080 Hb_002400_060 Hb_002400_060 Hb_002311_130--Hb_002400_060 Hb_007313_040 Hb_007313_040 Hb_002311_130--Hb_007313_040 Hb_002311_130--Hb_001998_220 Hb_001473_170 Hb_001473_170 Hb_002311_130--Hb_001473_170 Hb_005000_090 Hb_005000_090 Hb_002311_130--Hb_005000_090 Hb_030959_010 Hb_030959_010 Hb_005116_140--Hb_030959_010 Hb_000120_860 Hb_000120_860 Hb_005116_140--Hb_000120_860 Hb_009674_050 Hb_009674_050 Hb_005116_140--Hb_009674_050 Hb_005116_140--Hb_002311_130 Hb_005116_140--Hb_000025_500 Hb_009193_010 Hb_009193_010 Hb_000066_040--Hb_009193_010 Hb_001109_160 Hb_001109_160 Hb_000066_040--Hb_001109_160 Hb_000665_200 Hb_000665_200 Hb_000066_040--Hb_000665_200 Hb_000066_040--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_000066_040--Hb_004041_030 Hb_001702_050 Hb_001702_050 Hb_001998_220--Hb_001702_050 Hb_021977_010 Hb_021977_010 Hb_001998_220--Hb_021977_010 Hb_000809_250 Hb_000809_250 Hb_001998_220--Hb_000809_250 Hb_102763_010 Hb_102763_010 Hb_001998_220--Hb_102763_010 Hb_001998_220--Hb_005000_090 Hb_001414_010 Hb_001414_010 Hb_001998_220--Hb_001414_010 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_000025_500--Hb_004041_030 Hb_001235_130 Hb_001235_130 Hb_011174_080--Hb_001235_130 Hb_000157_140 Hb_000157_140 Hb_011174_080--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_011174_080--Hb_000256_160 Hb_029879_120 Hb_029879_120 Hb_011174_080--Hb_029879_120 Hb_011174_080--Hb_001702_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16306 4.47448 3.94098 7.83882 1.1441 2.01943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.845506 1.08121 1.5534 4.57065 9.86377

CAGE analysis