Hb_002805_150

Information

Type -
Description -
Location Contig2805: 123047-124510
Sequence    

Annotation

kegg
ID rcu:RCOM_1577260
description hypothetical protein
nr
ID XP_012074511.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067KLU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08388 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29285: 123821-124271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_150 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_012753_200 0.0378961503 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
3 Hb_012395_070 0.0823140188 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
4 Hb_003807_020 0.0957278793 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
5 Hb_003031_030 0.0959075306 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
6 Hb_000579_180 0.0971454623 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
7 Hb_001514_210 0.0980787033 - - hypothetical protein VITISV_012133 [Vitis vinifera]
8 Hb_002007_140 0.0993882447 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
9 Hb_004447_020 0.1015913371 - - carbohydrate binding protein, putative [Ricinus communis]
10 Hb_001355_110 0.1070008063 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
11 Hb_004574_010 0.1074104134 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
12 Hb_000335_050 0.1181156973 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
13 Hb_001266_020 0.1208503136 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
14 Hb_002391_350 0.1211760199 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
15 Hb_001221_480 0.1218623438 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_000616_050 0.1250027224 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
17 Hb_019229_020 0.1254974041 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
18 Hb_000085_230 0.126626292 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
19 Hb_000649_030 0.1282904548 - - scab resistance family protein [Populus trichocarpa]
20 Hb_001838_050 0.1304730493 - - hypothetical protein B456_007G218500 [Gossypium raimondii]

Gene co-expression network

sample Hb_002805_150 Hb_002805_150 Hb_012753_200 Hb_012753_200 Hb_002805_150--Hb_012753_200 Hb_012395_070 Hb_012395_070 Hb_002805_150--Hb_012395_070 Hb_003807_020 Hb_003807_020 Hb_002805_150--Hb_003807_020 Hb_003031_030 Hb_003031_030 Hb_002805_150--Hb_003031_030 Hb_000579_180 Hb_000579_180 Hb_002805_150--Hb_000579_180 Hb_001514_210 Hb_001514_210 Hb_002805_150--Hb_001514_210 Hb_012753_200--Hb_000579_180 Hb_012753_200--Hb_003807_020 Hb_002007_140 Hb_002007_140 Hb_012753_200--Hb_002007_140 Hb_012753_200--Hb_012395_070 Hb_012753_200--Hb_001514_210 Hb_005797_030 Hb_005797_030 Hb_012395_070--Hb_005797_030 Hb_000265_010 Hb_000265_010 Hb_012395_070--Hb_000265_010 Hb_001104_280 Hb_001104_280 Hb_012395_070--Hb_001104_280 Hb_004574_010 Hb_004574_010 Hb_012395_070--Hb_004574_010 Hb_000335_050 Hb_000335_050 Hb_003807_020--Hb_000335_050 Hb_003807_020--Hb_000579_180 Hb_004447_020 Hb_004447_020 Hb_003807_020--Hb_004447_020 Hb_003807_020--Hb_002007_140 Hb_009581_050 Hb_009581_050 Hb_003807_020--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_001838_050 Hb_001838_050 Hb_003031_030--Hb_001838_050 Hb_003031_030--Hb_004574_010 Hb_000616_050 Hb_000616_050 Hb_003031_030--Hb_000616_050 Hb_003031_030--Hb_012395_070 Hb_003031_030--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_000579_180--Hb_000085_230 Hb_010926_010 Hb_010926_010 Hb_000579_180--Hb_010926_010 Hb_012807_060 Hb_012807_060 Hb_000579_180--Hb_012807_060 Hb_001894_040 Hb_001894_040 Hb_000579_180--Hb_001894_040 Hb_001514_210--Hb_000085_230 Hb_001514_210--Hb_000579_180 Hb_002686_390 Hb_002686_390 Hb_001514_210--Hb_002686_390 Hb_001514_210--Hb_003031_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0528065 2.33823 0.450274 0.619433 0 0.0142877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.3885 0.303427

CAGE analysis