Hb_002805_170

Information

Type -
Description -
Location Contig2805: 134686-144824
Sequence    

Annotation

kegg
ID rcu:RCOM_0063290
description exosome complex exonuclease rrp45, putative
nr
ID XP_002531128.1
description exosome complex exonuclease rrp45, putative [Ricinus communis]
swissprot
ID Q9M209
description Protein ECERIFERUM 7 OS=Arabidopsis thaliana GN=CER7 PE=2 SV=1
trembl
ID B9SYQ9
description Exosome complex exonuclease rrp45, putative OS=Ricinus communis GN=RCOM_0063290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29288: 141044-143327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_170 0.0 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
2 Hb_012184_050 0.0864541848 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
3 Hb_007951_100 0.0943015191 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_001703_130 0.0949122031 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
5 Hb_010883_080 0.1005792798 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
6 Hb_000045_320 0.1029559428 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
7 Hb_002612_010 0.1036781899 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
8 Hb_009646_050 0.1117355766 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001117_190 0.1180859055 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
10 Hb_001473_080 0.1204237796 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
11 Hb_009178_020 0.1224811147 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
12 Hb_001946_240 0.1242758373 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
13 Hb_000685_080 0.1246274778 - - protein binding protein, putative [Ricinus communis]
14 Hb_121729_020 0.1277799626 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000116_570 0.1306714962 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
16 Hb_000281_010 0.1310458752 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
17 Hb_000317_150 0.1313146274 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
18 Hb_008246_030 0.1322588745 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
19 Hb_003540_160 0.1328123021 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
20 Hb_000504_170 0.136237916 - - hypothetical protein B456_006G033900 [Gossypium raimondii]

Gene co-expression network

sample Hb_002805_170 Hb_002805_170 Hb_012184_050 Hb_012184_050 Hb_002805_170--Hb_012184_050 Hb_007951_100 Hb_007951_100 Hb_002805_170--Hb_007951_100 Hb_001703_130 Hb_001703_130 Hb_002805_170--Hb_001703_130 Hb_010883_080 Hb_010883_080 Hb_002805_170--Hb_010883_080 Hb_000045_320 Hb_000045_320 Hb_002805_170--Hb_000045_320 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_000169_190 Hb_000169_190 Hb_012184_050--Hb_000169_190 Hb_012184_050--Hb_000045_320 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060 Hb_006452_160 Hb_006452_160 Hb_007951_100--Hb_006452_160 Hb_000140_330 Hb_000140_330 Hb_007951_100--Hb_000140_330 Hb_002301_270 Hb_002301_270 Hb_007951_100--Hb_002301_270 Hb_156144_030 Hb_156144_030 Hb_007951_100--Hb_156144_030 Hb_007943_120 Hb_007943_120 Hb_007951_100--Hb_007943_120 Hb_000116_570 Hb_000116_570 Hb_001703_130--Hb_000116_570 Hb_063409_020 Hb_063409_020 Hb_001703_130--Hb_063409_020 Hb_001703_130--Hb_010883_080 Hb_000281_010 Hb_000281_010 Hb_001703_130--Hb_000281_010 Hb_000685_080 Hb_000685_080 Hb_001703_130--Hb_000685_080 Hb_010883_080--Hb_000116_570 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_000016_280 Hb_000016_280 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_002997_160 Hb_002997_160 Hb_000045_320--Hb_002997_160 Hb_000173_150 Hb_000173_150 Hb_000045_320--Hb_000173_150 Hb_001269_200 Hb_001269_200 Hb_000045_320--Hb_001269_200 Hb_001117_190 Hb_001117_190 Hb_000045_320--Hb_001117_190 Hb_006829_090 Hb_006829_090 Hb_002612_010--Hb_006829_090 Hb_004920_060 Hb_004920_060 Hb_002612_010--Hb_004920_060 Hb_033594_020 Hb_033594_020 Hb_002612_010--Hb_033594_020 Hb_002612_010--Hb_000685_080 Hb_008246_030 Hb_008246_030 Hb_002612_010--Hb_008246_030 Hb_002612_010--Hb_001473_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9072 13.6932 10.1679 1.76882 18.5228 13.2183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15331 2.95699 2.22594 2.91293 1.90567

CAGE analysis