Hb_002805_190

Information

Type -
Description -
Location Contig2805: 149246-152758
Sequence    

Annotation

kegg
ID rcu:RCOM_1647480
description spliceosome associated protein, putative
nr
ID XP_002516394.1
description spliceosome associated protein, putative [Ricinus communis]
swissprot
ID Q6AYL5
description Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1
trembl
ID B9RRM5
description Spliceosome associated protein, putative OS=Ricinus communis GN=RCOM_1647480 PE=4 SV=1
Gene Ontology
ID GO:0005730
description splicing factor 3b subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29293: 149363-152692 , PASA_asmbl_29294: 151051-151245 , PASA_asmbl_29295: 153513-157569 , PASA_asmbl_29296: 153543-157906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_190 0.0 - - spliceosome associated protein, putative [Ricinus communis]
2 Hb_000398_080 0.0469328932 - - tip120, putative [Ricinus communis]
3 Hb_003861_050 0.0590450373 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
4 Hb_005289_040 0.0622098833 - - poly(A) polymerase, putative [Ricinus communis]
5 Hb_003638_090 0.064669314 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
6 Hb_008568_020 0.0665608853 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
7 Hb_001377_310 0.0666971424 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
8 Hb_016777_040 0.067961314 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
9 Hb_000462_060 0.0708647843 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
10 Hb_000836_410 0.0726061966 - - sec10, putative [Ricinus communis]
11 Hb_001268_280 0.0735673675 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000603_030 0.0747133886 - - Ribonuclease III, putative [Ricinus communis]
13 Hb_154580_010 0.0748092625 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
14 Hb_007747_040 0.0749992199 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
15 Hb_000243_210 0.0751485927 - - protein with unknown function [Ricinus communis]
16 Hb_000134_270 0.0753610442 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
17 Hb_001153_190 0.0755149307 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
18 Hb_004994_010 0.0759146124 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
19 Hb_001226_150 0.0760167754 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
20 Hb_007657_020 0.0761266583 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002805_190 Hb_002805_190 Hb_000398_080 Hb_000398_080 Hb_002805_190--Hb_000398_080 Hb_003861_050 Hb_003861_050 Hb_002805_190--Hb_003861_050 Hb_005289_040 Hb_005289_040 Hb_002805_190--Hb_005289_040 Hb_003638_090 Hb_003638_090 Hb_002805_190--Hb_003638_090 Hb_008568_020 Hb_008568_020 Hb_002805_190--Hb_008568_020 Hb_001377_310 Hb_001377_310 Hb_002805_190--Hb_001377_310 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000603_030 Hb_000603_030 Hb_000398_080--Hb_000603_030 Hb_004267_040 Hb_004267_040 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130 Hb_005867_070 Hb_005867_070 Hb_003861_050--Hb_005867_070 Hb_004994_010 Hb_004994_010 Hb_003861_050--Hb_004994_010 Hb_002889_010 Hb_002889_010 Hb_003861_050--Hb_002889_010 Hb_003861_050--Hb_001377_310 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_005289_040--Hb_003638_090 Hb_005588_090 Hb_005588_090 Hb_005289_040--Hb_005588_090 Hb_005289_040--Hb_000398_080 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_154580_010 Hb_154580_010 Hb_005289_040--Hb_154580_010 Hb_001488_200 Hb_001488_200 Hb_003638_090--Hb_001488_200 Hb_019654_040 Hb_019654_040 Hb_003638_090--Hb_019654_040 Hb_002374_260 Hb_002374_260 Hb_003638_090--Hb_002374_260 Hb_005965_030 Hb_005965_030 Hb_003638_090--Hb_005965_030 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5317 18.8051 21.1451 13.3951 17.1372 20.3646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6481 8.92284 10.9229 17.2947 14.0334

CAGE analysis