Hb_002805_220

Information

Type -
Description -
Location Contig2805: 188917-194686
Sequence    

Annotation

kegg
ID rcu:RCOM_0819460
description mitochondrial 60S ribosomal protein L2, putative
nr
ID XP_012082297.1
description PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
swissprot
ID P93311
description 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1
trembl
ID A0A067KB80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16468 PE=4 SV=1
Gene Ontology
ID GO:0030529
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29303: 188396-188562 , PASA_asmbl_29304: 190300-190961 , PASA_asmbl_29305: 191828-194802 , PASA_asmbl_29306: 191811-194449 , PASA_asmbl_29307: 191828-194471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_220 0.0 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
2 Hb_008695_040 0.0898502778 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
3 Hb_005736_060 0.0906618285 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
4 Hb_000342_100 0.0939819046 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
5 Hb_000207_400 0.0966293511 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
6 Hb_008695_050 0.1004031146 - - conserved hypothetical protein [Ricinus communis]
7 Hb_062226_140 0.1036789576 - - PREDICTED: protein NEDD1 [Jatropha curcas]
8 Hb_000135_060 0.1064754401 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
9 Hb_000307_090 0.1064932438 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
10 Hb_001824_010 0.1088531909 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
11 Hb_076693_030 0.1115403776 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
12 Hb_007735_030 0.111589611 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
13 Hb_009711_020 0.1132267851 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
14 Hb_000331_470 0.1145249503 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
15 Hb_001616_040 0.1150296748 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
16 Hb_002477_140 0.1156574869 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
17 Hb_000496_120 0.116969189 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
18 Hb_006816_530 0.1179084287 - - 60S ribosomal protein L18, putative [Ricinus communis]
19 Hb_001421_060 0.118591696 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
20 Hb_000152_420 0.122353972 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_002805_220 Hb_002805_220 Hb_008695_040 Hb_008695_040 Hb_002805_220--Hb_008695_040 Hb_005736_060 Hb_005736_060 Hb_002805_220--Hb_005736_060 Hb_000342_100 Hb_000342_100 Hb_002805_220--Hb_000342_100 Hb_000207_400 Hb_000207_400 Hb_002805_220--Hb_000207_400 Hb_008695_050 Hb_008695_050 Hb_002805_220--Hb_008695_050 Hb_062226_140 Hb_062226_140 Hb_002805_220--Hb_062226_140 Hb_000840_190 Hb_000840_190 Hb_008695_040--Hb_000840_190 Hb_001824_010 Hb_001824_010 Hb_008695_040--Hb_001824_010 Hb_001421_060 Hb_001421_060 Hb_008695_040--Hb_001421_060 Hb_002596_040 Hb_002596_040 Hb_008695_040--Hb_002596_040 Hb_076693_030 Hb_076693_030 Hb_008695_040--Hb_076693_030 Hb_000307_090 Hb_000307_090 Hb_005736_060--Hb_000307_090 Hb_159809_020 Hb_159809_020 Hb_005736_060--Hb_159809_020 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_001616_040 Hb_001616_040 Hb_005736_060--Hb_001616_040 Hb_002963_010 Hb_002963_010 Hb_005736_060--Hb_002963_010 Hb_001140_370 Hb_001140_370 Hb_000342_100--Hb_001140_370 Hb_002893_050 Hb_002893_050 Hb_000342_100--Hb_002893_050 Hb_000342_100--Hb_062226_140 Hb_000610_050 Hb_000610_050 Hb_000342_100--Hb_000610_050 Hb_000003_080 Hb_000003_080 Hb_000342_100--Hb_000003_080 Hb_024071_020 Hb_024071_020 Hb_000342_100--Hb_024071_020 Hb_000207_400--Hb_062226_140 Hb_000207_400--Hb_008695_050 Hb_001047_240 Hb_001047_240 Hb_000207_400--Hb_001047_240 Hb_000212_290 Hb_000212_290 Hb_000207_400--Hb_000212_290 Hb_005391_040 Hb_005391_040 Hb_000207_400--Hb_005391_040 Hb_001057_040 Hb_001057_040 Hb_008695_050--Hb_001057_040 Hb_001653_020 Hb_001653_020 Hb_008695_050--Hb_001653_020 Hb_005307_050 Hb_005307_050 Hb_008695_050--Hb_005307_050 Hb_000414_130 Hb_000414_130 Hb_008695_050--Hb_000414_130 Hb_007928_030 Hb_007928_030 Hb_008695_050--Hb_007928_030 Hb_000331_470 Hb_000331_470 Hb_062226_140--Hb_000331_470 Hb_062226_140--Hb_005391_040 Hb_000465_390 Hb_000465_390 Hb_062226_140--Hb_000465_390 Hb_000111_380 Hb_000111_380 Hb_062226_140--Hb_000111_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4457 5.61641 2.99564 7.00873 4.30683 9.04073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9333 17.2888 4.90849 7.43732 3.75042

CAGE analysis