Hb_002805_290

Information

Type transcription factor
Description TF Family: GRAS
Location Contig2805: 239640-240995
Sequence    

Annotation

kegg
ID rcu:RCOM_1244860
description transcription factor, putative
nr
ID XP_002516708.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9LPR8
description Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1
trembl
ID B9RSI9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1244860 PE=4 SV=1
Gene Ontology
ID GO:0005634
description scarecrow-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29312: 239531-239787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_290 0.0 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
2 Hb_055259_010 0.130928751 - - -
3 Hb_004116_040 0.1381373894 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
4 Hb_002235_400 0.1461805636 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
5 Hb_003106_140 0.1541607898 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003680_070 0.1547624786 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
7 Hb_000700_130 0.1550735392 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
8 Hb_001999_120 0.1563953405 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
9 Hb_000120_590 0.1572962789 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
10 Hb_001754_010 0.1587566469 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_148209_120 0.1592074872 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
12 Hb_000206_220 0.1634229562 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
13 Hb_000261_460 0.1661378801 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
14 Hb_001373_150 0.1666877913 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
15 Hb_048141_010 0.1671447823 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
16 Hb_023226_090 0.1683189978 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
17 Hb_008554_020 0.1709977468 - - -
18 Hb_005618_040 0.1732782054 - - -
19 Hb_008847_010 0.1740060411 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_010710_020 0.1760076147 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]

Gene co-expression network

sample Hb_002805_290 Hb_002805_290 Hb_055259_010 Hb_055259_010 Hb_002805_290--Hb_055259_010 Hb_004116_040 Hb_004116_040 Hb_002805_290--Hb_004116_040 Hb_002235_400 Hb_002235_400 Hb_002805_290--Hb_002235_400 Hb_003106_140 Hb_003106_140 Hb_002805_290--Hb_003106_140 Hb_003680_070 Hb_003680_070 Hb_002805_290--Hb_003680_070 Hb_000700_130 Hb_000700_130 Hb_002805_290--Hb_000700_130 Hb_000206_220 Hb_000206_220 Hb_055259_010--Hb_000206_220 Hb_055259_010--Hb_003106_140 Hb_001999_120 Hb_001999_120 Hb_055259_010--Hb_001999_120 Hb_003751_120 Hb_003751_120 Hb_055259_010--Hb_003751_120 Hb_005618_040 Hb_005618_040 Hb_055259_010--Hb_005618_040 Hb_003086_020 Hb_003086_020 Hb_004116_040--Hb_003086_020 Hb_001235_070 Hb_001235_070 Hb_004116_040--Hb_001235_070 Hb_002025_320 Hb_002025_320 Hb_004116_040--Hb_002025_320 Hb_000608_420 Hb_000608_420 Hb_004116_040--Hb_000608_420 Hb_148209_120 Hb_148209_120 Hb_004116_040--Hb_148209_120 Hb_003086_110 Hb_003086_110 Hb_004116_040--Hb_003086_110 Hb_003052_100 Hb_003052_100 Hb_002235_400--Hb_003052_100 Hb_003050_230 Hb_003050_230 Hb_002235_400--Hb_003050_230 Hb_002411_200 Hb_002411_200 Hb_002235_400--Hb_002411_200 Hb_001711_030 Hb_001711_030 Hb_002235_400--Hb_001711_030 Hb_002681_020 Hb_002681_020 Hb_002235_400--Hb_002681_020 Hb_000922_270 Hb_000922_270 Hb_002235_400--Hb_000922_270 Hb_004206_030 Hb_004206_030 Hb_003106_140--Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_003106_140--Hb_060668_010 Hb_000032_220 Hb_000032_220 Hb_003106_140--Hb_000032_220 Hb_002387_060 Hb_002387_060 Hb_003106_140--Hb_002387_060 Hb_001514_180 Hb_001514_180 Hb_003106_140--Hb_001514_180 Hb_000041_070 Hb_000041_070 Hb_003106_140--Hb_000041_070 Hb_000261_460 Hb_000261_460 Hb_003680_070--Hb_000261_460 Hb_001538_100 Hb_001538_100 Hb_003680_070--Hb_001538_100 Hb_010172_030 Hb_010172_030 Hb_003680_070--Hb_010172_030 Hb_000865_070 Hb_000865_070 Hb_003680_070--Hb_000865_070 Hb_002781_020 Hb_002781_020 Hb_003680_070--Hb_002781_020 Hb_001754_010 Hb_001754_010 Hb_003680_070--Hb_001754_010 Hb_000700_130--Hb_000922_270 Hb_000174_070 Hb_000174_070 Hb_000700_130--Hb_000174_070 Hb_003408_020 Hb_003408_020 Hb_000700_130--Hb_003408_020 Hb_001863_480 Hb_001863_480 Hb_000700_130--Hb_001863_480 Hb_004965_070 Hb_004965_070 Hb_000700_130--Hb_004965_070 Hb_000700_130--Hb_002235_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07173 0.761388 0.0701004 1.11029 1.62023 5.70604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9033 4.50203 5.11615 3.86438 0.402657

CAGE analysis