Hb_002809_030

Information

Type -
Description -
Location Contig2809: 27153-32620
Sequence    

Annotation

kegg
ID rcu:RCOM_1682480
description hypothetical protein
nr
ID XP_002509675.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GYC7
description PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1
trembl
ID B9RBZ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1682480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29326: 27333-32588
cDNA
(Sanger)
(ID:Location)		 040_K03.ab1: 27359-29916

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000352_230 0.0393292985 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000320_370 0.0423636811 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
4 Hb_000307_100 0.0484210074 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
5 Hb_000098_040 0.0502527797 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
6 Hb_001348_160 0.0543883601 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_001191_060 0.0576204221 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
8 Hb_002818_130 0.0621418778 - - cytochrome P450, putative [Ricinus communis]
9 Hb_009771_090 0.0628416317 - - -
10 Hb_001269_480 0.0633160256 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
11 Hb_010697_020 0.0646871042 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000545_180 0.0683724853 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
13 Hb_001310_020 0.0690425225 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
14 Hb_001564_120 0.0691719441 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
15 Hb_086022_020 0.0712696101 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
16 Hb_000012_370 0.0728909597 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000329_430 0.072903062 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
18 Hb_008748_050 0.075059575 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
19 Hb_007044_270 0.0759867292 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
20 Hb_003033_020 0.0762320094 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_002809_030 Hb_002809_030 Hb_000352_230 Hb_000352_230 Hb_002809_030--Hb_000352_230 Hb_000320_370 Hb_000320_370 Hb_002809_030--Hb_000320_370 Hb_000307_100 Hb_000307_100 Hb_002809_030--Hb_000307_100 Hb_000098_040 Hb_000098_040 Hb_002809_030--Hb_000098_040 Hb_001348_160 Hb_001348_160 Hb_002809_030--Hb_001348_160 Hb_001191_060 Hb_001191_060 Hb_002809_030--Hb_001191_060 Hb_009771_090 Hb_009771_090 Hb_000352_230--Hb_009771_090 Hb_000352_230--Hb_000098_040 Hb_000545_180 Hb_000545_180 Hb_000352_230--Hb_000545_180 Hb_000352_230--Hb_000307_100 Hb_014361_120 Hb_014361_120 Hb_000352_230--Hb_014361_120 Hb_002785_040 Hb_002785_040 Hb_000320_370--Hb_002785_040 Hb_086022_020 Hb_086022_020 Hb_000320_370--Hb_086022_020 Hb_000320_370--Hb_000352_230 Hb_008748_050 Hb_008748_050 Hb_000320_370--Hb_008748_050 Hb_000589_340 Hb_000589_340 Hb_000320_370--Hb_000589_340 Hb_000307_100--Hb_000098_040 Hb_000329_430 Hb_000329_430 Hb_000307_100--Hb_000329_430 Hb_000307_100--Hb_009771_090 Hb_010697_020 Hb_010697_020 Hb_000307_100--Hb_010697_020 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_000098_040--Hb_000329_430 Hb_000098_040--Hb_009771_090 Hb_001348_160--Hb_010697_020 Hb_001348_160--Hb_001191_060 Hb_001269_480 Hb_001269_480 Hb_001348_160--Hb_001269_480 Hb_031862_220 Hb_031862_220 Hb_001348_160--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001348_160--Hb_000373_210 Hb_001310_020 Hb_001310_020 Hb_001191_060--Hb_001310_020 Hb_001191_060--Hb_001269_480 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_002818_130 Hb_002818_130 Hb_001191_060--Hb_002818_130 Hb_003033_020 Hb_003033_020 Hb_001191_060--Hb_003033_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0157863 4.68966 62.9956 36.1605 0 0.0485681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.144042 0.226627 0 0.249221 171.917

CAGE analysis