Hb_002809_130

Information

Type -
Description -
Location Contig2809: 89471-94082
Sequence    

Annotation

kegg
ID rcu:RCOM_1682640
description mads box protein, putative
nr
ID XP_002509681.1
description mads box protein, putative [Ricinus communis]
swissprot
ID O82743
description Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1
trembl
ID B9RBZ7
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1682640 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29331: 89293-111587 , PASA_asmbl_29332: 89293-111591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_130 0.0 - - mads box protein, putative [Ricinus communis]
2 Hb_007441_300 0.1103867912 - - ATP binding protein, putative [Ricinus communis]
3 Hb_029584_060 0.1143269308 - - Grave disease carrier protein, putative [Ricinus communis]
4 Hb_017491_060 0.1236689982 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
5 Hb_002609_210 0.126194212 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
6 Hb_003125_190 0.1271584267 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
7 Hb_003126_090 0.1271600954 - - Rop1 [Hevea brasiliensis]
8 Hb_001016_030 0.1279112935 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
9 Hb_005278_020 0.1289858399 - - PREDICTED: sorcin-like [Jatropha curcas]
10 Hb_017413_010 0.1294280842 - - -
11 Hb_000030_290 0.1301726889 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
12 Hb_009711_020 0.1306812068 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
13 Hb_143496_010 0.1315121702 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
14 Hb_010815_030 0.131714195 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
15 Hb_002918_290 0.1324149996 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
16 Hb_002830_020 0.1333712177 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_000042_200 0.1334735088 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
18 Hb_001318_250 0.1343642417 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
19 Hb_004459_040 0.1352210494 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
20 Hb_000934_250 0.135859957 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]

Gene co-expression network

sample Hb_002809_130 Hb_002809_130 Hb_007441_300 Hb_007441_300 Hb_002809_130--Hb_007441_300 Hb_029584_060 Hb_029584_060 Hb_002809_130--Hb_029584_060 Hb_017491_060 Hb_017491_060 Hb_002809_130--Hb_017491_060 Hb_002609_210 Hb_002609_210 Hb_002809_130--Hb_002609_210 Hb_003125_190 Hb_003125_190 Hb_002809_130--Hb_003125_190 Hb_003126_090 Hb_003126_090 Hb_002809_130--Hb_003126_090 Hb_000317_070 Hb_000317_070 Hb_007441_300--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_007441_300--Hb_174865_010 Hb_003018_020 Hb_003018_020 Hb_007441_300--Hb_003018_020 Hb_004871_020 Hb_004871_020 Hb_007441_300--Hb_004871_020 Hb_004459_040 Hb_004459_040 Hb_007441_300--Hb_004459_040 Hb_000948_220 Hb_000948_220 Hb_007441_300--Hb_000948_220 Hb_002431_050 Hb_002431_050 Hb_029584_060--Hb_002431_050 Hb_002830_020 Hb_002830_020 Hb_029584_060--Hb_002830_020 Hb_000120_750 Hb_000120_750 Hb_029584_060--Hb_000120_750 Hb_000201_120 Hb_000201_120 Hb_029584_060--Hb_000201_120 Hb_007416_020 Hb_007416_020 Hb_029584_060--Hb_007416_020 Hb_001080_080 Hb_001080_080 Hb_029584_060--Hb_001080_080 Hb_143496_010 Hb_143496_010 Hb_017491_060--Hb_143496_010 Hb_006541_010 Hb_006541_010 Hb_017491_060--Hb_006541_010 Hb_007065_010 Hb_007065_010 Hb_017491_060--Hb_007065_010 Hb_017413_010 Hb_017413_010 Hb_017491_060--Hb_017413_010 Hb_001616_040 Hb_001616_040 Hb_017491_060--Hb_001616_040 Hb_004157_030 Hb_004157_030 Hb_017491_060--Hb_004157_030 Hb_009711_020 Hb_009711_020 Hb_002609_210--Hb_009711_020 Hb_005211_190 Hb_005211_190 Hb_002609_210--Hb_005211_190 Hb_000030_290 Hb_000030_290 Hb_002609_210--Hb_000030_290 Hb_009421_040 Hb_009421_040 Hb_002609_210--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_002609_210--Hb_000680_140 Hb_000334_210 Hb_000334_210 Hb_002609_210--Hb_000334_210 Hb_003607_050 Hb_003607_050 Hb_003125_190--Hb_003607_050 Hb_003683_110 Hb_003683_110 Hb_003125_190--Hb_003683_110 Hb_000887_020 Hb_000887_020 Hb_003125_190--Hb_000887_020 Hb_010106_010 Hb_010106_010 Hb_003125_190--Hb_010106_010 Hb_139518_030 Hb_139518_030 Hb_003125_190--Hb_139518_030 Hb_000996_140 Hb_000996_140 Hb_003125_190--Hb_000996_140 Hb_033594_110 Hb_033594_110 Hb_003126_090--Hb_033594_110 Hb_000934_250 Hb_000934_250 Hb_003126_090--Hb_000934_250 Hb_001016_030 Hb_001016_030 Hb_003126_090--Hb_001016_030 Hb_001318_250 Hb_001318_250 Hb_003126_090--Hb_001318_250 Hb_065525_020 Hb_065525_020 Hb_003126_090--Hb_065525_020 Hb_003126_090--Hb_002830_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1122 6.50501 18.1162 27.3209 23.1227 18.2741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.0519 59.3255 18.923 7.16332 18.2266

CAGE analysis