Hb_002809_160

Information

Type -
Description -
Location Contig2809: 125908-135092
Sequence    

Annotation

kegg
ID rcu:RCOM_1682960
description hypothetical protein
nr
ID XP_012087040.1
description PREDICTED: protein FAM63A [Jatropha curcas]
swissprot
ID Q76LS9
description Protein FAM63A OS=Mus musculus GN=Fam63a PE=1 SV=1
trembl
ID A0A067JNT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20698 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29333: 125991-135063 , PASA_asmbl_29334: 126681-126966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_160 0.0 - - PREDICTED: protein FAM63A [Jatropha curcas]
2 Hb_143629_020 0.0720938868 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
3 Hb_001414_010 0.073175077 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
4 Hb_029552_020 0.0751362452 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005305_130 0.0782581172 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
6 Hb_009078_020 0.0802738777 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
7 Hb_000172_360 0.0877320063 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
8 Hb_006794_020 0.0882587303 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
9 Hb_001408_020 0.0916849893 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
10 Hb_005772_030 0.09205085 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
11 Hb_011188_010 0.093328974 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
12 Hb_000260_760 0.0935386445 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
13 Hb_160608_010 0.094035463 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
14 Hb_000665_260 0.0954196817 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
15 Hb_011457_140 0.0964615235 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
16 Hb_009476_120 0.0966891713 - - Clathrin heavy chain 1 [Glycine soja]
17 Hb_005885_030 0.0968380999 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_001484_090 0.0971047454 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_002686_410 0.097792399 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
20 Hb_000470_110 0.0979759577 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]

Gene co-expression network

sample Hb_002809_160 Hb_002809_160 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_001414_010 Hb_001414_010 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_009078_020 Hb_009078_020 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_004586_090 Hb_004586_090 Hb_143629_020--Hb_004586_090 Hb_006794_020 Hb_006794_020 Hb_143629_020--Hb_006794_020 Hb_000428_030 Hb_000428_030 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002078_470 Hb_002078_470 Hb_143629_020--Hb_002078_470 Hb_021977_010 Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_003661_010 Hb_003661_010 Hb_001414_010--Hb_003661_010 Hb_009476_120 Hb_009476_120 Hb_001414_010--Hb_009476_120 Hb_008165_020 Hb_008165_020 Hb_001414_010--Hb_008165_020 Hb_000300_030 Hb_000300_030 Hb_001414_010--Hb_000300_030 Hb_001414_010--Hb_160608_010 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_001279_020 Hb_001279_020 Hb_029552_020--Hb_001279_020 Hb_029552_020--Hb_005305_130 Hb_000529_130 Hb_000529_130 Hb_029552_020--Hb_000529_130 Hb_000562_070 Hb_000562_070 Hb_029552_020--Hb_000562_070 Hb_009158_060 Hb_009158_060 Hb_005305_130--Hb_009158_060 Hb_005305_130--Hb_003661_010 Hb_005305_130--Hb_160608_010 Hb_005305_130--Hb_001414_010 Hb_001159_060 Hb_001159_060 Hb_005305_130--Hb_001159_060 Hb_001059_060 Hb_001059_060 Hb_009078_020--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_009078_020--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330 Hb_003058_140 Hb_003058_140 Hb_000172_360--Hb_003058_140 Hb_005305_100 Hb_005305_100 Hb_000172_360--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_000172_360--Hb_000260_760 Hb_000172_360--Hb_008165_020 Hb_000172_360--Hb_009158_060 Hb_000172_360--Hb_001159_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.98849 12.5362 12.7762 9.57886 4.82767 5.51618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14524 1.49748 2.02509 9.63206 13.5774

CAGE analysis