Hb_002809_180

Information

Type -
Description -
Location Contig2809: 157837-158391
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08550g
description POPTRDRAFT_845868; homeodomain transcription factor family protein
nr
ID XP_012087042.1
description PREDICTED: homeobox protein HD1 [Jatropha curcas]
swissprot
ID Q9FPQ8
description Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1
trembl
ID A0A067JRS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20699 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29336: 157775-158365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_180 0.0 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
2 Hb_010172_040 0.0521312569 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
3 Hb_001397_020 0.0613381582 - - cytochrome P450 family protein [Populus trichocarpa]
4 Hb_001140_290 0.0651904834 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
5 Hb_003549_100 0.0677277605 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
6 Hb_010589_010 0.0694615681 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
7 Hb_003152_020 0.0705874602 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
8 Hb_004650_110 0.0713234199 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
9 Hb_000103_440 0.0727132072 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
10 Hb_061256_020 0.0728703417 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_000017_180 0.0748928883 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
12 Hb_001278_120 0.0756501507 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
13 Hb_000172_270 0.075949377 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
14 Hb_004459_010 0.0787635473 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
15 Hb_000343_070 0.0816560545 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
16 Hb_003058_240 0.0829920175 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
17 Hb_007163_110 0.0833499332 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
18 Hb_000402_060 0.0857215618 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
19 Hb_002151_070 0.0880559771 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
20 Hb_128986_010 0.0890537703 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002809_180 Hb_002809_180 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_001397_020 Hb_001397_020 Hb_002809_180--Hb_001397_020 Hb_001140_290 Hb_001140_290 Hb_002809_180--Hb_001140_290 Hb_003549_100 Hb_003549_100 Hb_002809_180--Hb_003549_100 Hb_010589_010 Hb_010589_010 Hb_002809_180--Hb_010589_010 Hb_003152_020 Hb_003152_020 Hb_002809_180--Hb_003152_020 Hb_000343_070 Hb_000343_070 Hb_010172_040--Hb_000343_070 Hb_000421_040 Hb_000421_040 Hb_010172_040--Hb_000421_040 Hb_000172_270 Hb_000172_270 Hb_010172_040--Hb_000172_270 Hb_000707_090 Hb_000707_090 Hb_010172_040--Hb_000707_090 Hb_001278_120 Hb_001278_120 Hb_010172_040--Hb_001278_120 Hb_001397_020--Hb_003549_100 Hb_001397_020--Hb_010589_010 Hb_001397_020--Hb_003152_020 Hb_010883_160 Hb_010883_160 Hb_001397_020--Hb_010883_160 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_002151_070 Hb_002151_070 Hb_001140_290--Hb_002151_070 Hb_005000_150 Hb_005000_150 Hb_001140_290--Hb_005000_150 Hb_138977_010 Hb_138977_010 Hb_001140_290--Hb_138977_010 Hb_000103_440 Hb_000103_440 Hb_001140_290--Hb_000103_440 Hb_001140_290--Hb_010589_010 Hb_132880_010 Hb_132880_010 Hb_003549_100--Hb_132880_010 Hb_029587_010 Hb_029587_010 Hb_003549_100--Hb_029587_010 Hb_003549_100--Hb_010589_010 Hb_095744_010 Hb_095744_010 Hb_003549_100--Hb_095744_010 Hb_010589_010--Hb_029587_010 Hb_001433_090 Hb_001433_090 Hb_010589_010--Hb_001433_090 Hb_010589_010--Hb_000002_110 Hb_001500_130 Hb_001500_130 Hb_010589_010--Hb_001500_130 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_003152_020--Hb_010589_010 Hb_003152_020--Hb_005000_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.82139 6.60706 25.769 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.493772 22.8828

CAGE analysis