Hb_002810_020

Information

Type -
Description -
Location Contig2810: 62516-64957
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02930g
description POPTRDRAFT_550938; pentatricopeptide repeat-containing family protein
nr
ID XP_012065865.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
swissprot
ID Q9FRI5
description Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
trembl
ID B9GRG5
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0002s02930g PE=4 SV=2
Gene Ontology
ID GO:0030054
description pentatricopeptide repeat-containing protein at1g25360

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002810_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
2 Hb_000022_250 0.0710296216 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
3 Hb_011161_010 0.072872988 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
4 Hb_000406_220 0.0772915572 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
5 Hb_181235_010 0.0794870466 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
6 Hb_002154_030 0.0821871686 - - RNA binding protein, putative [Ricinus communis]
7 Hb_002477_030 0.0833278302 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
8 Hb_000554_020 0.0860064978 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
9 Hb_000977_070 0.0872131867 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
10 Hb_001720_050 0.0872752098 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
11 Hb_006316_040 0.0873708895 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
12 Hb_003777_330 0.0875734304 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
13 Hb_001159_100 0.0876311441 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
14 Hb_000421_260 0.0898934869 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
15 Hb_002496_030 0.0902802035 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
16 Hb_011316_050 0.0913265006 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
17 Hb_000032_290 0.0914292697 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
18 Hb_000787_110 0.0914958839 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
19 Hb_007951_050 0.0921369781 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003001_140 0.0923665009 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002810_020 Hb_002810_020 Hb_000022_250 Hb_000022_250 Hb_002810_020--Hb_000022_250 Hb_011161_010 Hb_011161_010 Hb_002810_020--Hb_011161_010 Hb_000406_220 Hb_000406_220 Hb_002810_020--Hb_000406_220 Hb_181235_010 Hb_181235_010 Hb_002810_020--Hb_181235_010 Hb_002154_030 Hb_002154_030 Hb_002810_020--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_002810_020--Hb_002477_030 Hb_007951_050 Hb_007951_050 Hb_000022_250--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000022_250--Hb_000554_020 Hb_001159_100 Hb_001159_100 Hb_000022_250--Hb_001159_100 Hb_010172_050 Hb_010172_050 Hb_000022_250--Hb_010172_050 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330 Hb_011161_010--Hb_000406_220 Hb_011161_010--Hb_002154_030 Hb_004128_060 Hb_004128_060 Hb_011161_010--Hb_004128_060 Hb_011161_010--Hb_181235_010 Hb_000032_290 Hb_000032_290 Hb_011161_010--Hb_000032_290 Hb_000406_220--Hb_000554_020 Hb_000406_220--Hb_000032_290 Hb_000406_220--Hb_181235_010 Hb_001789_090 Hb_001789_090 Hb_000406_220--Hb_001789_090 Hb_181235_010--Hb_002154_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_181235_010--Hb_000032_290 Hb_000207_390 Hb_000207_390 Hb_002154_030--Hb_000207_390 Hb_002154_030--Hb_000062_240 Hb_000803_190 Hb_000803_190 Hb_002154_030--Hb_000803_190 Hb_001301_200 Hb_001301_200 Hb_002154_030--Hb_001301_200 Hb_007163_090 Hb_007163_090 Hb_002154_030--Hb_007163_090 Hb_001736_040 Hb_001736_040 Hb_002477_030--Hb_001736_040 Hb_000827_070 Hb_000827_070 Hb_002477_030--Hb_000827_070 Hb_000030_040 Hb_000030_040 Hb_002477_030--Hb_000030_040 Hb_001797_050 Hb_001797_050 Hb_002477_030--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_002477_030--Hb_005188_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69577 1.6182 0.582845 0.441312 1.8264 2.81551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25062 2.26768 2.39145 0.951641 0.666589

CAGE analysis