Hb_002810_030

Information

Type -
Description -
Location Contig2810: 68618-76322
Sequence    

Annotation

kegg
ID rcu:RCOM_0364320
description peroxisomal targeting signal type 1 (pts1) receptor, putative
nr
ID CAN71162.1
description hypothetical protein VITISV_015705 [Vitis vinifera]
swissprot
ID Q9FMA3
description Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1
trembl
ID A5ADY2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015705 PE=4 SV=1
Gene Ontology
ID GO:0005622
description peroxisome biogenesis protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002810_030 0.0 - - hypothetical protein VITISV_015705 [Vitis vinifera]
2 Hb_000914_070 0.1029871235 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
3 Hb_000580_190 0.104967764 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
4 Hb_005117_010 0.1084155673 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
5 Hb_004055_140 0.1156281164 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_006641_010 0.1164141048 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
7 Hb_011671_220 0.1166796042 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002902_110 0.1183100152 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
9 Hb_001266_080 0.1245023468 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
10 Hb_000041_050 0.1279684036 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
11 Hb_000347_200 0.1284350362 - - lsm1, putative [Ricinus communis]
12 Hb_000380_010 0.1298738185 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
13 Hb_001124_080 0.1308486774 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
14 Hb_000491_090 0.131617345 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
15 Hb_010436_060 0.1323063696 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
16 Hb_015057_010 0.1382086959 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
17 Hb_009117_030 0.1386104403 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
18 Hb_000173_340 0.1389051747 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
19 Hb_000364_150 0.1401752318 - - -
20 Hb_005398_030 0.1418792694 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002810_030 Hb_002810_030 Hb_000914_070 Hb_000914_070 Hb_002810_030--Hb_000914_070 Hb_000580_190 Hb_000580_190 Hb_002810_030--Hb_000580_190 Hb_005117_010 Hb_005117_010 Hb_002810_030--Hb_005117_010 Hb_004055_140 Hb_004055_140 Hb_002810_030--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_002810_030--Hb_006641_010 Hb_011671_220 Hb_011671_220 Hb_002810_030--Hb_011671_220 Hb_000364_150 Hb_000364_150 Hb_000914_070--Hb_000364_150 Hb_012490_040 Hb_012490_040 Hb_000914_070--Hb_012490_040 Hb_000914_070--Hb_005117_010 Hb_001266_080 Hb_001266_080 Hb_000914_070--Hb_001266_080 Hb_000347_200 Hb_000347_200 Hb_000914_070--Hb_000347_200 Hb_000914_070--Hb_004055_140 Hb_000264_170 Hb_000264_170 Hb_000580_190--Hb_000264_170 Hb_000041_050 Hb_000041_050 Hb_000580_190--Hb_000041_050 Hb_004920_120 Hb_004920_120 Hb_000580_190--Hb_004920_120 Hb_011671_180 Hb_011671_180 Hb_000580_190--Hb_011671_180 Hb_007317_180 Hb_007317_180 Hb_000580_190--Hb_007317_180 Hb_005117_010--Hb_011671_220 Hb_000230_540 Hb_000230_540 Hb_005117_010--Hb_000230_540 Hb_005117_010--Hb_004055_140 Hb_005117_010--Hb_006641_010 Hb_010436_060 Hb_010436_060 Hb_005117_010--Hb_010436_060 Hb_002616_050 Hb_002616_050 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_004055_140--Hb_001266_080 Hb_006641_010--Hb_010436_060 Hb_074979_020 Hb_074979_020 Hb_006641_010--Hb_074979_020 Hb_000028_140 Hb_000028_140 Hb_006641_010--Hb_000028_140 Hb_001155_030 Hb_001155_030 Hb_006641_010--Hb_001155_030 Hb_002759_060 Hb_002759_060 Hb_006641_010--Hb_002759_060 Hb_020000_010 Hb_020000_010 Hb_011671_220--Hb_020000_010 Hb_011671_220--Hb_000230_540 Hb_011671_220--Hb_004055_140 Hb_011671_220--Hb_010436_060 Hb_002551_020 Hb_002551_020 Hb_011671_220--Hb_002551_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.28912 3.18553 1.83487 6.44623 5.15174 29.2607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6473 11.491 19.6755 11.3467 7.12215

CAGE analysis