Hb_002811_050

Information

Type -
Description -
Location Contig2811: 50334-50933
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05080g
description rubredoxin family protein
nr
ID XP_012089210.1
description PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
swissprot
ID P73068
description Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1
trembl
ID A0A067JUG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23458 PE=4 SV=1
Gene Ontology
ID GO:0005506
description rubredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 007_N23.ab1: 50411-51147 , 042_D04.ab1: 50372-51048 , 044_F01.ab1: 50332-51057

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_050 0.0 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
2 Hb_007982_040 0.1101350019 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
3 Hb_000099_170 0.1110111925 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
4 Hb_000264_280 0.1158810025 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
5 Hb_071079_020 0.1204517232 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
6 Hb_000208_270 0.1237742383 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
7 Hb_005181_120 0.1243648245 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000061_250 0.1285339905 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
9 Hb_000679_080 0.1314315618 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
10 Hb_001221_400 0.1328408271 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
11 Hb_000108_150 0.1336423466 - - alpha/beta hydrolase, putative [Ricinus communis]
12 Hb_000005_100 0.1353839663 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
13 Hb_001014_020 0.1368728624 - - gene GA family protein [Populus trichocarpa]
14 Hb_010721_020 0.1370410388 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
15 Hb_010098_040 0.1377336331 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
16 Hb_000042_050 0.1380819256 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
17 Hb_001053_020 0.138107217 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
18 Hb_012799_190 0.1384182757 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
19 Hb_000322_030 0.1390051035 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
20 Hb_024066_040 0.1393592208 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_050 Hb_002811_050 Hb_007982_040 Hb_007982_040 Hb_002811_050--Hb_007982_040 Hb_000099_170 Hb_000099_170 Hb_002811_050--Hb_000099_170 Hb_000264_280 Hb_000264_280 Hb_002811_050--Hb_000264_280 Hb_071079_020 Hb_071079_020 Hb_002811_050--Hb_071079_020 Hb_000208_270 Hb_000208_270 Hb_002811_050--Hb_000208_270 Hb_005181_120 Hb_005181_120 Hb_002811_050--Hb_005181_120 Hb_007982_040--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_007982_040--Hb_010098_040 Hb_010721_020 Hb_010721_020 Hb_007982_040--Hb_010721_020 Hb_009692_040 Hb_009692_040 Hb_007982_040--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_007982_040--Hb_000193_220 Hb_000516_080 Hb_000516_080 Hb_007982_040--Hb_000516_080 Hb_000099_170--Hb_071079_020 Hb_000108_150 Hb_000108_150 Hb_000099_170--Hb_000108_150 Hb_002675_080 Hb_002675_080 Hb_000099_170--Hb_002675_080 Hb_000322_030 Hb_000322_030 Hb_000099_170--Hb_000322_030 Hb_000099_170--Hb_005181_120 Hb_000061_250 Hb_000061_250 Hb_000099_170--Hb_000061_250 Hb_003664_030 Hb_003664_030 Hb_000264_280--Hb_003664_030 Hb_000264_280--Hb_000108_150 Hb_000264_280--Hb_000061_250 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_003948_020 Hb_003948_020 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_071079_020--Hb_000108_150 Hb_000045_050 Hb_000045_050 Hb_071079_020--Hb_000045_050 Hb_071079_020--Hb_000061_250 Hb_004242_170 Hb_004242_170 Hb_071079_020--Hb_004242_170 Hb_071079_020--Hb_005181_120 Hb_020141_030 Hb_020141_030 Hb_000208_270--Hb_020141_030 Hb_000208_270--Hb_010098_040 Hb_000787_210 Hb_000787_210 Hb_000208_270--Hb_000787_210 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_002814_010 Hb_002814_010 Hb_000208_270--Hb_002814_010 Hb_005181_120--Hb_010098_040 Hb_005181_120--Hb_000516_080 Hb_000679_080 Hb_000679_080 Hb_005181_120--Hb_000679_080 Hb_002811_250 Hb_002811_250 Hb_005181_120--Hb_002811_250 Hb_005181_120--Hb_000108_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00727 34.0282 72.7826 62.5148 6.45447 9.80018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5015 7.69773 1.94313 5.23965 130.079

CAGE analysis