Hb_002811_120

Information

Type -
Description -
Location Contig2811: 112593-113564
Sequence    

Annotation

kegg
ID rcu:RCOM_1428060
description DNA-damage-repair/toleration protein DRT102, putative
nr
ID XP_012089221.1
description PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
swissprot
ID Q05212
description DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=1 SV=2
trembl
ID A0A067JI57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23469 PE=4 SV=1
Gene Ontology
ID GO:0016853
description dna-damage-repair toleration protein drt102

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29404: 112337-113766 , PASA_asmbl_29405: 112497-113809
cDNA
(Sanger)
(ID:Location)		 007_M13.ab1: 112552-113324 , 009_P07.ab1: 112552-113330 , 015_O12.ab1: 112337-113138 , 045_B14.ab1: 112552-113353 , 046_D18.ab1: 112552-113385

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_120 0.0 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
2 Hb_004881_050 0.0752312 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
3 Hb_003711_040 0.0842885097 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
4 Hb_003434_060 0.0878219393 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
5 Hb_079326_010 0.0922585191 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
6 Hb_001863_110 0.0994384031 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_000316_030 0.0998356057 - - zinc finger protein, putative [Ricinus communis]
8 Hb_005129_050 0.1000145959 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
9 Hb_083043_010 0.1005575086 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
10 Hb_005000_270 0.1025559933 - - unnamed protein product [Vitis vinifera]
11 Hb_000076_080 0.1038644656 - - PREDICTED: protein MOS2 [Jatropha curcas]
12 Hb_000134_360 0.1040670328 - - PREDICTED: protein gar2 [Jatropha curcas]
13 Hb_000307_200 0.1042431279 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
14 Hb_001329_280 0.1045024138 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000390_060 0.1054083833 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
16 Hb_005635_010 0.1057051847 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
17 Hb_003581_020 0.1065689975 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
18 Hb_003363_010 0.1070896738 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006114_020 0.1071489514 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000078_100 0.1076482176 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_120 Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_002811_120--Hb_004881_050 Hb_003711_040 Hb_003711_040 Hb_002811_120--Hb_003711_040 Hb_003434_060 Hb_003434_060 Hb_002811_120--Hb_003434_060 Hb_079326_010 Hb_079326_010 Hb_002811_120--Hb_079326_010 Hb_001863_110 Hb_001863_110 Hb_002811_120--Hb_001863_110 Hb_000316_030 Hb_000316_030 Hb_002811_120--Hb_000316_030 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_004881_050--Hb_003434_060 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_083043_010 Hb_083043_010 Hb_003711_040--Hb_083043_010 Hb_006455_090 Hb_006455_090 Hb_003711_040--Hb_006455_090 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_005000_270 Hb_005000_270 Hb_003711_040--Hb_005000_270 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_000120_500 Hb_000120_500 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_003434_060--Hb_000316_030 Hb_079326_010--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_079326_010--Hb_002475_050 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_000134_360 Hb_000134_360 Hb_079326_010--Hb_000134_360 Hb_000034_050 Hb_000034_050 Hb_001863_110--Hb_000034_050 Hb_000335_010 Hb_000335_010 Hb_001863_110--Hb_000335_010 Hb_003581_120 Hb_003581_120 Hb_001863_110--Hb_003581_120 Hb_010222_030 Hb_010222_030 Hb_001863_110--Hb_010222_030 Hb_002400_180 Hb_002400_180 Hb_001863_110--Hb_002400_180 Hb_002174_060 Hb_002174_060 Hb_001863_110--Hb_002174_060 Hb_001040_160 Hb_001040_160 Hb_000316_030--Hb_001040_160 Hb_000316_030--Hb_000390_060 Hb_000316_030--Hb_001609_010 Hb_000316_030--Hb_063047_010 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.634 41.3311 14.373 56.3199 175.212 238.077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.4599 57.4835 48.4778 60.8239 37.7687

CAGE analysis