Hb_002811_130

Information

Type -
Description -
Location Contig2811: 114110-124162
Sequence    

Annotation

kegg
ID rcu:RCOM_1428040
description Zeta-carotene desaturase, chloroplast precursor, putative (EC:1.14.99.30)
nr
ID XP_002512239.1
description Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9FV46
description Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1
trembl
ID B9RES0
description Zeta-carotene desaturase, chloroplast, putative OS=Ricinus communis GN=RCOM_1428040 PE=4 SV=1
Gene Ontology
ID GO:0016491
description zeta-carotene desaturase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29406: 116448-123947 , PASA_asmbl_29407: 119672-121595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_130 0.0 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
2 Hb_000289_110 0.0701164328 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
3 Hb_011716_130 0.0750152745 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
4 Hb_002014_030 0.079328578 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
5 Hb_005847_060 0.0807754993 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
6 Hb_006274_030 0.0807947213 - - F-box and wd40 domain protein, putative [Ricinus communis]
7 Hb_000061_210 0.0816413014 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
8 Hb_001366_180 0.0828870604 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
9 Hb_000053_020 0.0869813842 - - F-box and wd40 domain protein, putative [Ricinus communis]
10 Hb_008453_030 0.0926558919 - - Thioredoxin superfamily protein [Theobroma cacao]
11 Hb_103118_010 0.0936952031 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
12 Hb_018133_090 0.094126206 - - conserved hypothetical protein [Ricinus communis]
13 Hb_032258_030 0.0956432072 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
14 Hb_004330_090 0.0966240693 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_001369_750 0.0968192125 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
16 Hb_000120_290 0.0975578056 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
17 Hb_000421_220 0.0978845922 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
18 Hb_000479_250 0.0982214363 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
19 Hb_000861_020 0.1004806246 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
20 Hb_012675_050 0.1004871083 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002811_130 Hb_002811_130 Hb_000289_110 Hb_000289_110 Hb_002811_130--Hb_000289_110 Hb_011716_130 Hb_011716_130 Hb_002811_130--Hb_011716_130 Hb_002014_030 Hb_002014_030 Hb_002811_130--Hb_002014_030 Hb_005847_060 Hb_005847_060 Hb_002811_130--Hb_005847_060 Hb_006274_030 Hb_006274_030 Hb_002811_130--Hb_006274_030 Hb_000061_210 Hb_000061_210 Hb_002811_130--Hb_000061_210 Hb_001006_020 Hb_001006_020 Hb_000289_110--Hb_001006_020 Hb_001366_180 Hb_001366_180 Hb_000289_110--Hb_001366_180 Hb_005144_050 Hb_005144_050 Hb_000289_110--Hb_005144_050 Hb_000289_110--Hb_002014_030 Hb_000337_050 Hb_000337_050 Hb_000289_110--Hb_000337_050 Hb_011716_130--Hb_005847_060 Hb_000815_070 Hb_000815_070 Hb_011716_130--Hb_000815_070 Hb_000224_160 Hb_000224_160 Hb_011716_130--Hb_000224_160 Hb_002600_090 Hb_002600_090 Hb_011716_130--Hb_002600_090 Hb_012022_150 Hb_012022_150 Hb_011716_130--Hb_012022_150 Hb_002014_030--Hb_001366_180 Hb_002014_030--Hb_006274_030 Hb_017987_030 Hb_017987_030 Hb_002014_030--Hb_017987_030 Hb_018272_020 Hb_018272_020 Hb_002014_030--Hb_018272_020 Hb_001662_150 Hb_001662_150 Hb_005847_060--Hb_001662_150 Hb_001922_170 Hb_001922_170 Hb_005847_060--Hb_001922_170 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_001579_270 Hb_001579_270 Hb_005847_060--Hb_001579_270 Hb_006274_030--Hb_001366_180 Hb_000479_250 Hb_000479_250 Hb_006274_030--Hb_000479_250 Hb_001971_010 Hb_001971_010 Hb_006274_030--Hb_001971_010 Hb_000053_020 Hb_000053_020 Hb_006274_030--Hb_000053_020 Hb_006478_020 Hb_006478_020 Hb_006274_030--Hb_006478_020 Hb_103118_010 Hb_103118_010 Hb_000061_210--Hb_103118_010 Hb_008453_030 Hb_008453_030 Hb_000061_210--Hb_008453_030 Hb_002408_020 Hb_002408_020 Hb_000061_210--Hb_002408_020 Hb_012675_050 Hb_012675_050 Hb_000061_210--Hb_012675_050 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.35977 3.51845 5.88502 6.1811 6.63483 8.27417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2838 12.5771 6.60945 6.76639 13.7237

CAGE analysis