Hb_002811_170

Information

Type -
Description -
Location Contig2811: 145135-147766
Sequence    

Annotation

kegg
ID rcu:RCOM_1427870
description 40S ribosomal protein S3a, putative
nr
ID XP_012089233.1
description PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
swissprot
ID A5B4K1
description 40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1
trembl
ID A0A067JLE1
description 40S ribosomal protein S3a OS=Jatropha curcas GN=JCGZ_23476 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29413: 145134-147767 , PASA_asmbl_29414: 145781-146091 , PASA_asmbl_29415: 145790-146093
cDNA
(Sanger)
(ID:Location)		 006_B11.ab1: 145459-147767 , 013_B24.ab1: 145723-147767 , 025_E22.ab1: 145400-147763 , 029_L16.ab1: 145499-147767 , 044_F03.ab1: 145725-147763

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_170 0.0 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
2 Hb_007747_050 0.0514911674 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
3 Hb_000836_470 0.0604411393 - - -
4 Hb_001931_010 0.0698594971 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
5 Hb_001863_430 0.0706606246 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
6 Hb_001728_030 0.0707237178 - - 60S ribosomal protein L15 [Populus trichocarpa]
7 Hb_001016_150 0.0733160427 - - Rop1 [Hevea brasiliensis]
8 Hb_000419_020 0.0767795792 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001341_150 0.0783300642 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
10 Hb_000735_090 0.0784740727 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
11 Hb_000085_350 0.0810442937 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
12 Hb_002078_140 0.0818590577 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
13 Hb_015299_030 0.0819898037 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
14 Hb_000136_260 0.0827053855 - - 40S ribosomal protein S5A [Hevea brasiliensis]
15 Hb_003494_050 0.0852289715 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
16 Hb_028396_010 0.0858178497 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
17 Hb_026053_020 0.0862501161 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
18 Hb_000946_090 0.0868151613 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
19 Hb_000538_120 0.0887511543 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
20 Hb_001718_030 0.0891277117 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_170 Hb_002811_170 Hb_007747_050 Hb_007747_050 Hb_002811_170--Hb_007747_050 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_001863_430 Hb_001863_430 Hb_002811_170--Hb_001863_430 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_001016_150 Hb_001016_150 Hb_002811_170--Hb_001016_150 Hb_000419_020 Hb_000419_020 Hb_007747_050--Hb_000419_020 Hb_000735_090 Hb_000735_090 Hb_007747_050--Hb_000735_090 Hb_003494_050 Hb_003494_050 Hb_007747_050--Hb_003494_050 Hb_000085_350 Hb_000085_350 Hb_007747_050--Hb_000085_350 Hb_007747_050--Hb_001863_430 Hb_000836_470--Hb_001728_030 Hb_003018_020 Hb_003018_020 Hb_000836_470--Hb_003018_020 Hb_003018_010 Hb_003018_010 Hb_000836_470--Hb_003018_010 Hb_002798_020 Hb_002798_020 Hb_000836_470--Hb_002798_020 Hb_002056_050 Hb_002056_050 Hb_000836_470--Hb_002056_050 Hb_008071_020 Hb_008071_020 Hb_001931_010--Hb_008071_020 Hb_006326_040 Hb_006326_040 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_001728_030--Hb_002078_140 Hb_001728_030--Hb_001016_150 Hb_000172_320 Hb_000172_320 Hb_001728_030--Hb_000172_320 Hb_001989_090 Hb_001989_090 Hb_001728_030--Hb_001989_090 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001016_150--Hb_002078_140 Hb_001016_150--Hb_001341_150 Hb_001016_150--Hb_000506_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.196 90.5838 245.514 199.576 118.532 137.13
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
211.451 536.846 162.706 198.89 137.744

CAGE analysis