Hb_002811_180

Information

Type -
Description -
Location Contig2811: 149133-153901
Sequence    

Annotation

kegg
ID rcu:RCOM_1427860
description hypothetical protein
nr
ID XP_002512231.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6TGY8
description ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2 SV=1
trembl
ID B9RER2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1427860 PE=4 SV=1
Gene Ontology
ID GO:0005515
description er membrane protein complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29416: 149203-153905
cDNA
(Sanger)
(ID:Location)		 003_B06.ab1: 149919-153827 , 024_L07.ab1: 149971-153822 , 031_M18.ab1: 149947-153865 , 043_F15.ab1: 149900-153865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003750_050 0.0558327415 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
3 Hb_000260_330 0.0615972599 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
4 Hb_000621_010 0.0616372956 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
5 Hb_008847_030 0.065150636 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
6 Hb_000392_430 0.065607184 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
7 Hb_000111_320 0.0665313037 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
8 Hb_000025_180 0.0689483716 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
9 Hb_000466_140 0.0701652499 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
10 Hb_001279_150 0.0714325133 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
11 Hb_028512_020 0.0716822221 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
12 Hb_000345_240 0.0733048816 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
13 Hb_000923_010 0.0744355596 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
14 Hb_003683_020 0.0745659813 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_004567_090 0.0760431332 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
16 Hb_000035_470 0.0780083473 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_010964_040 0.0789195581 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
18 Hb_007390_010 0.0791351844 - - catalytic, putative [Ricinus communis]
19 Hb_004990_010 0.0796555711 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
20 Hb_004109_080 0.0800435075 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002811_180 Hb_002811_180 Hb_003750_050 Hb_003750_050 Hb_002811_180--Hb_003750_050 Hb_000260_330 Hb_000260_330 Hb_002811_180--Hb_000260_330 Hb_000621_010 Hb_000621_010 Hb_002811_180--Hb_000621_010 Hb_008847_030 Hb_008847_030 Hb_002811_180--Hb_008847_030 Hb_000392_430 Hb_000392_430 Hb_002811_180--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_002811_180--Hb_000111_320 Hb_000156_010 Hb_000156_010 Hb_003750_050--Hb_000156_010 Hb_000120_670 Hb_000120_670 Hb_003750_050--Hb_000120_670 Hb_001279_150 Hb_001279_150 Hb_003750_050--Hb_001279_150 Hb_011037_030 Hb_011037_030 Hb_003750_050--Hb_011037_030 Hb_054865_150 Hb_054865_150 Hb_003750_050--Hb_054865_150 Hb_000025_180 Hb_000025_180 Hb_000260_330--Hb_000025_180 Hb_028512_020 Hb_028512_020 Hb_000260_330--Hb_028512_020 Hb_000345_240 Hb_000345_240 Hb_000260_330--Hb_000345_240 Hb_003683_020 Hb_003683_020 Hb_000260_330--Hb_003683_020 Hb_000923_010 Hb_000923_010 Hb_000260_330--Hb_000923_010 Hb_000621_010--Hb_008847_030 Hb_000181_130 Hb_000181_130 Hb_000621_010--Hb_000181_130 Hb_003938_090 Hb_003938_090 Hb_000621_010--Hb_003938_090 Hb_005054_090 Hb_005054_090 Hb_000621_010--Hb_005054_090 Hb_005504_060 Hb_005504_060 Hb_000621_010--Hb_005504_060 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_000392_430--Hb_000111_320 Hb_001314_050 Hb_001314_050 Hb_000392_430--Hb_001314_050 Hb_001671_100 Hb_001671_100 Hb_000392_430--Hb_001671_100 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000466_140 Hb_000466_140 Hb_000392_430--Hb_000466_140 Hb_000111_320--Hb_000466_140 Hb_000111_320--Hb_001314_050 Hb_001247_310 Hb_001247_310 Hb_000111_320--Hb_001247_310 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3902 20.7006 21.4622 39.2888 30.7182 38.3023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2426 36.8948 21.7393 35.6705 25.1038

CAGE analysis