Hb_002811_190

Information

Type -
Description -
Location Contig2811: 154535-164054
Sequence    

Annotation

kegg
ID rcu:RCOM_1427850
description tRNA pseudouridine synthase d, putative
nr
ID XP_002512230.1
description tRNA pseudouridine synthase d, putative [Ricinus communis]
swissprot
ID Q08647
description Multisubstrate pseudouridine synthase 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS7 PE=1 SV=1
trembl
ID B9RER1
description tRNA pseudouridine synthase d, putative OS=Ricinus communis GN=RCOM_1427850 PE=4 SV=1
Gene Ontology
ID GO:0003723
description multisubstrate pseudouridine synthase 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29417: 159906-160588 , PASA_asmbl_29418: 162078-162267 , PASA_asmbl_29419: 162376-162773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_190 0.0 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
2 Hb_001425_010 0.09846697 - - sugar transporter, putative [Ricinus communis]
3 Hb_000977_150 0.1025424513 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
4 Hb_001405_080 0.1051165732 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
5 Hb_021409_190 0.1072880488 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
6 Hb_000640_260 0.1105482192 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
7 Hb_000329_080 0.1111500799 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
8 Hb_004041_030 0.1148772587 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
9 Hb_002811_200 0.1150085352 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
10 Hb_001811_080 0.1153625067 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
11 Hb_052946_010 0.1169476473 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
12 Hb_000163_110 0.1185891796 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
13 Hb_018043_020 0.1196598655 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
14 Hb_008616_040 0.1205613185 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
15 Hb_000963_090 0.1213713145 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
16 Hb_000997_290 0.1234701588 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
17 Hb_005695_080 0.1250578008 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
18 Hb_001365_010 0.1255697787 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
19 Hb_159809_090 0.1294176935 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
20 Hb_003029_140 0.1298828059 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002811_190 Hb_002811_190 Hb_001425_010 Hb_001425_010 Hb_002811_190--Hb_001425_010 Hb_000977_150 Hb_000977_150 Hb_002811_190--Hb_000977_150 Hb_001405_080 Hb_001405_080 Hb_002811_190--Hb_001405_080 Hb_021409_190 Hb_021409_190 Hb_002811_190--Hb_021409_190 Hb_000640_260 Hb_000640_260 Hb_002811_190--Hb_000640_260 Hb_000329_080 Hb_000329_080 Hb_002811_190--Hb_000329_080 Hb_018043_020 Hb_018043_020 Hb_001425_010--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001425_010--Hb_008616_040 Hb_159809_090 Hb_159809_090 Hb_001425_010--Hb_159809_090 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003549_050 Hb_003549_050 Hb_001425_010--Hb_003549_050 Hb_003029_140 Hb_003029_140 Hb_001425_010--Hb_003029_140 Hb_000032_600 Hb_000032_600 Hb_000977_150--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_000977_150--Hb_001054_060 Hb_067664_010 Hb_067664_010 Hb_000977_150--Hb_067664_010 Hb_000977_150--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_000977_150--Hb_001195_370 Hb_001405_080--Hb_003549_050 Hb_004111_030 Hb_004111_030 Hb_001405_080--Hb_004111_030 Hb_004041_030 Hb_004041_030 Hb_001405_080--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_001405_080--Hb_002150_020 Hb_052946_010 Hb_052946_010 Hb_001405_080--Hb_052946_010 Hb_021409_190--Hb_008616_040 Hb_021409_190--Hb_000640_260 Hb_021409_190--Hb_003029_140 Hb_021409_190--Hb_018043_020 Hb_001109_160 Hb_001109_160 Hb_021409_190--Hb_001109_160 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_166127_030 Hb_166127_030 Hb_000640_260--Hb_166127_030 Hb_000934_020 Hb_000934_020 Hb_000640_260--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_000640_260--Hb_000189_250 Hb_000640_260--Hb_003029_140 Hb_001365_010 Hb_001365_010 Hb_000329_080--Hb_001365_010 Hb_000163_110 Hb_000163_110 Hb_000329_080--Hb_000163_110 Hb_000329_080--Hb_001195_370 Hb_000300_680 Hb_000300_680 Hb_000329_080--Hb_000300_680 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.224118 0.909971 1.71746 1.12215 0.20423 0.285564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259397 0.334037 0.569669 1.67278 4.36949

CAGE analysis