Hb_002811_210

Information

Type -
Description -
Location Contig2811: 165808-174112
Sequence    

Annotation

kegg
ID rcu:RCOM_1427830
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012089239.1
description PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SLI2
description Serine/threonine-protein kinase Nek1 OS=Arabidopsis thaliana GN=NEK1 PE=2 SV=2
trembl
ID B9REQ9
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1427830 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase nek2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29420: 165540-172846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_210 0.0 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
2 Hb_004635_020 0.0967922003 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
3 Hb_000028_530 0.1243584573 - - Protein regulator of cytokinesis, putative [Ricinus communis]
4 Hb_000960_120 0.1253699099 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
5 Hb_000265_100 0.1310408683 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
6 Hb_010021_060 0.1318422866 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
7 Hb_000936_030 0.1331265769 - - hypothetical protein RCOM_0615680 [Ricinus communis]
8 Hb_000316_070 0.1334376897 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
9 Hb_004102_090 0.1346136442 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
10 Hb_007632_080 0.1350024532 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
11 Hb_000002_430 0.1365704177 - - PREDICTED: FHA domain-containing protein At4g14490 [Populus euphratica]
12 Hb_004963_020 0.1374495951 - - PREDICTED: patellin-4 [Populus euphratica]
13 Hb_001454_180 0.1431229637 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
14 Hb_001864_040 0.1434792355 - - PREDICTED: kinesin-1 [Jatropha curcas]
15 Hb_002205_180 0.1438018485 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
16 Hb_000189_350 0.145993865 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
17 Hb_005276_090 0.1465555136 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
18 Hb_001761_010 0.1480924251 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
19 Hb_001168_030 0.1481264307 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
20 Hb_012150_040 0.1483985977 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002811_210 Hb_002811_210 Hb_004635_020 Hb_004635_020 Hb_002811_210--Hb_004635_020 Hb_000028_530 Hb_000028_530 Hb_002811_210--Hb_000028_530 Hb_000960_120 Hb_000960_120 Hb_002811_210--Hb_000960_120 Hb_000265_100 Hb_000265_100 Hb_002811_210--Hb_000265_100 Hb_010021_060 Hb_010021_060 Hb_002811_210--Hb_010021_060 Hb_000936_030 Hb_000936_030 Hb_002811_210--Hb_000936_030 Hb_000316_070 Hb_000316_070 Hb_004635_020--Hb_000316_070 Hb_000856_390 Hb_000856_390 Hb_004635_020--Hb_000856_390 Hb_000085_360 Hb_000085_360 Hb_004635_020--Hb_000085_360 Hb_080952_060 Hb_080952_060 Hb_004635_020--Hb_080952_060 Hb_119044_040 Hb_119044_040 Hb_004635_020--Hb_119044_040 Hb_007245_030 Hb_007245_030 Hb_004635_020--Hb_007245_030 Hb_000334_120 Hb_000334_120 Hb_000028_530--Hb_000334_120 Hb_000028_530--Hb_000265_100 Hb_002374_090 Hb_002374_090 Hb_000028_530--Hb_002374_090 Hb_000189_350 Hb_000189_350 Hb_000028_530--Hb_000189_350 Hb_033041_010 Hb_033041_010 Hb_000028_530--Hb_033041_010 Hb_004963_020 Hb_004963_020 Hb_000028_530--Hb_004963_020 Hb_013344_010 Hb_013344_010 Hb_000960_120--Hb_013344_010 Hb_001761_010 Hb_001761_010 Hb_000960_120--Hb_001761_010 Hb_022092_040 Hb_022092_040 Hb_000960_120--Hb_022092_040 Hb_006060_010 Hb_006060_010 Hb_000960_120--Hb_006060_010 Hb_008406_100 Hb_008406_100 Hb_000960_120--Hb_008406_100 Hb_000265_100--Hb_000334_120 Hb_010705_040 Hb_010705_040 Hb_000265_100--Hb_010705_040 Hb_000265_100--Hb_002374_090 Hb_000265_100--Hb_004963_020 Hb_002473_030 Hb_002473_030 Hb_000265_100--Hb_002473_030 Hb_001454_180 Hb_001454_180 Hb_010021_060--Hb_001454_180 Hb_002837_030 Hb_002837_030 Hb_010021_060--Hb_002837_030 Hb_162378_020 Hb_162378_020 Hb_010021_060--Hb_162378_020 Hb_011063_030 Hb_011063_030 Hb_010021_060--Hb_011063_030 Hb_002686_070 Hb_002686_070 Hb_010021_060--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_010021_060--Hb_007044_260 Hb_001755_040 Hb_001755_040 Hb_000936_030--Hb_001755_040 Hb_004129_060 Hb_004129_060 Hb_000936_030--Hb_004129_060 Hb_000936_030--Hb_010705_040 Hb_002205_180 Hb_002205_180 Hb_000936_030--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_000936_030--Hb_002232_310 Hb_004102_090 Hb_004102_090 Hb_000936_030--Hb_004102_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0577418 0.307872 6.92099 2.68141 0.356945 0.13185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.025056 0 0 0.659447 0.373873

CAGE analysis