Hb_002811_290

Information

Type -
Description -
Location Contig2811: 224615-227801
Sequence    

Annotation

kegg
ID rcu:RCOM_1427600
description aldo/keto reductase, putative (EC:1.1.1.65)
nr
ID XP_002512216.1
description aldo/keto reductase, putative [Ricinus communis]
swissprot
ID Q93ZN2
description Probable aldo-keto reductase 4 OS=Arabidopsis thaliana GN=At1g60710 PE=2 SV=1
trembl
ID B9REP7
description Aldo/keto reductase, putative OS=Ricinus communis GN=RCOM_1427600 PE=4 SV=1
Gene Ontology
ID GO:0050236
description probable aldo-keto reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29435: 224604-227803
cDNA
(Sanger)
(ID:Location)		 004_P19.ab1: 226008-227803 , 039_N14.ab1: 227022-227803

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_290 0.0 - - aldo/keto reductase, putative [Ricinus communis]
2 Hb_000331_430 0.1029207308 - - PREDICTED: uncharacterized protein LOC105640242 [Jatropha curcas]
3 Hb_004994_210 0.1078837747 - - phosphomannomutase family protein [Populus trichocarpa]
4 Hb_006846_130 0.1096704006 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
5 Hb_001396_210 0.1106247551 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003848_040 0.1111968896 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
7 Hb_001449_010 0.1122529704 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002304_150 0.1128008637 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
9 Hb_004041_020 0.1143790828 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
10 Hb_001234_070 0.1171058876 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
11 Hb_000300_260 0.1184505619 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
12 Hb_000429_040 0.1195529103 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
13 Hb_000076_220 0.1207353556 - - thioredoxin domain-containing protein, putative [Ricinus communis]
14 Hb_003082_030 0.1216163877 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
15 Hb_002284_150 0.1235220342 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
16 Hb_002946_190 0.1240588336 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
17 Hb_001799_030 0.1243841284 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
18 Hb_000270_680 0.1243915171 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
19 Hb_182424_030 0.1249889951 - - PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]
20 Hb_012565_070 0.1256305473 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]

Gene co-expression network

sample Hb_002811_290 Hb_002811_290 Hb_000331_430 Hb_000331_430 Hb_002811_290--Hb_000331_430 Hb_004994_210 Hb_004994_210 Hb_002811_290--Hb_004994_210 Hb_006846_130 Hb_006846_130 Hb_002811_290--Hb_006846_130 Hb_001396_210 Hb_001396_210 Hb_002811_290--Hb_001396_210 Hb_003848_040 Hb_003848_040 Hb_002811_290--Hb_003848_040 Hb_001449_010 Hb_001449_010 Hb_002811_290--Hb_001449_010 Hb_000331_430--Hb_001449_010 Hb_001234_070 Hb_001234_070 Hb_000331_430--Hb_001234_070 Hb_002228_070 Hb_002228_070 Hb_000331_430--Hb_002228_070 Hb_004041_020 Hb_004041_020 Hb_000331_430--Hb_004041_020 Hb_000429_040 Hb_000429_040 Hb_000331_430--Hb_000429_040 Hb_001633_090 Hb_001633_090 Hb_004994_210--Hb_001633_090 Hb_000076_220 Hb_000076_220 Hb_004994_210--Hb_000076_220 Hb_053709_050 Hb_053709_050 Hb_004994_210--Hb_053709_050 Hb_007850_030 Hb_007850_030 Hb_004994_210--Hb_007850_030 Hb_000174_260 Hb_000174_260 Hb_004994_210--Hb_000174_260 Hb_006538_090 Hb_006538_090 Hb_004994_210--Hb_006538_090 Hb_002301_150 Hb_002301_150 Hb_006846_130--Hb_002301_150 Hb_006846_130--Hb_000076_220 Hb_000130_270 Hb_000130_270 Hb_006846_130--Hb_000130_270 Hb_006573_190 Hb_006573_190 Hb_006846_130--Hb_006573_190 Hb_003582_060 Hb_003582_060 Hb_006846_130--Hb_003582_060 Hb_001931_010 Hb_001931_010 Hb_006846_130--Hb_001931_010 Hb_012340_090 Hb_012340_090 Hb_001396_210--Hb_012340_090 Hb_001025_090 Hb_001025_090 Hb_001396_210--Hb_001025_090 Hb_001396_210--Hb_003848_040 Hb_002092_120 Hb_002092_120 Hb_001396_210--Hb_002092_120 Hb_001105_170 Hb_001105_170 Hb_001396_210--Hb_001105_170 Hb_000270_470 Hb_000270_470 Hb_001396_210--Hb_000270_470 Hb_003848_040--Hb_001105_170 Hb_012565_070 Hb_012565_070 Hb_003848_040--Hb_012565_070 Hb_003848_040--Hb_012340_090 Hb_003207_180 Hb_003207_180 Hb_003848_040--Hb_003207_180 Hb_000300_260 Hb_000300_260 Hb_003848_040--Hb_000300_260 Hb_001472_100 Hb_001472_100 Hb_003848_040--Hb_001472_100 Hb_001449_010--Hb_001234_070 Hb_048898_010 Hb_048898_010 Hb_001449_010--Hb_048898_010 Hb_003362_030 Hb_003362_030 Hb_001449_010--Hb_003362_030 Hb_171900_060 Hb_171900_060 Hb_001449_010--Hb_171900_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7379 4.19596 15.7545 10.6925 3.31724 3.95798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9635 10.6352 6.20612 6.77613 6.31779

CAGE analysis