Hb_002811_310

Information

Type -
Description -
Location Contig2811: 231354-249049
Sequence    

Annotation

kegg
ID atr:s00062p00144860
description AMTR_s00062p00144860; hypothetical protein
nr
ID CAN78540.1
description hypothetical protein VITISV_025505 [Vitis vinifera]
swissprot
ID A1UEC6
description Uncharacterized oxidoreductase Mkms_1985 OS=Mycobacterium sp. (strain KMS) GN=Mkms_1985 PE=3 SV=1
trembl
ID A5B174
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025505 PE=4 SV=1
Gene Ontology
ID GO:0050236
description aldo keto

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29438: 232769-232905 , PASA_asmbl_29439: 233080-233526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_310 0.0 - - hypothetical protein VITISV_025505 [Vitis vinifera]
2 Hb_003680_090 0.0900290908 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
3 Hb_027298_020 0.1059005255 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
4 Hb_000703_070 0.1059940952 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
5 Hb_005563_040 0.113055226 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
6 Hb_010557_010 0.1178030318 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
7 Hb_002411_100 0.1184848045 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
8 Hb_148146_010 0.1214476361 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
9 Hb_000803_170 0.1216232033 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
10 Hb_005917_020 0.124499722 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
11 Hb_004837_100 0.1252262558 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
12 Hb_000684_200 0.1283460398 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
13 Hb_001300_130 0.1304772456 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
14 Hb_002811_250 0.1307579341 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
15 Hb_000019_080 0.1332941505 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
16 Hb_005116_100 0.1345817054 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
17 Hb_142663_020 0.1346201165 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
18 Hb_001579_280 0.1363210304 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
19 Hb_003053_070 0.1381835934 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
20 Hb_001863_180 0.1390869404 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_310 Hb_002811_310 Hb_003680_090 Hb_003680_090 Hb_002811_310--Hb_003680_090 Hb_027298_020 Hb_027298_020 Hb_002811_310--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_002811_310--Hb_000703_070 Hb_005563_040 Hb_005563_040 Hb_002811_310--Hb_005563_040 Hb_010557_010 Hb_010557_010 Hb_002811_310--Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_002811_310--Hb_002411_100 Hb_005917_020 Hb_005917_020 Hb_003680_090--Hb_005917_020 Hb_000270_280 Hb_000270_280 Hb_003680_090--Hb_000270_280 Hb_004162_270 Hb_004162_270 Hb_003680_090--Hb_004162_270 Hb_001863_180 Hb_001863_180 Hb_003680_090--Hb_001863_180 Hb_003053_070 Hb_003053_070 Hb_003680_090--Hb_003053_070 Hb_027298_020--Hb_000703_070 Hb_001300_130 Hb_001300_130 Hb_027298_020--Hb_001300_130 Hb_000803_170 Hb_000803_170 Hb_027298_020--Hb_000803_170 Hb_027298_020--Hb_010557_010 Hb_002232_380 Hb_002232_380 Hb_027298_020--Hb_002232_380 Hb_000703_070--Hb_010557_010 Hb_000703_070--Hb_002411_100 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_002811_250 Hb_002811_250 Hb_000703_070--Hb_002811_250 Hb_000703_070--Hb_002232_380 Hb_005563_040--Hb_000803_170 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_005563_040--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_005563_040--Hb_000442_070 Hb_001579_280 Hb_001579_280 Hb_005563_040--Hb_001579_280 Hb_005563_040--Hb_010557_010 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.594455 0.587884 5.35242 1.24412 0.152156 0.211396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.525989 0.445183 0.465469 1.08542 5.83078

CAGE analysis