Hb_002813_010

Information

Type -
Description -
Location Contig2813: 39108-46557
Sequence    

Annotation

kegg
ID rcu:RCOM_0301280
description hypothetical protein
nr
ID XP_012081844.1
description PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K047
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29447: 39355-46547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002813_010 0.0 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
2 Hb_005946_170 0.0722883071 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
3 Hb_001080_270 0.0792623216 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
4 Hb_000421_120 0.0822978934 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
5 Hb_000865_080 0.0839282221 - - arsenite-resistance protein, putative [Ricinus communis]
6 Hb_002524_040 0.0846698783 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
7 Hb_004162_280 0.0863290666 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
8 Hb_000025_360 0.0874356632 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
9 Hb_006316_070 0.08767412 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
10 Hb_001718_090 0.0888771181 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
11 Hb_002659_060 0.0894715262 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
12 Hb_002477_150 0.0900923514 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
13 Hb_001157_180 0.090125929 - - protein binding protein, putative [Ricinus communis]
14 Hb_000363_130 0.0903926678 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
15 Hb_000224_060 0.0906296934 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
16 Hb_003878_140 0.0907669344 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
17 Hb_001584_170 0.0929617443 - - neutral/alkaline invertase [Manihot esculenta]
18 Hb_002977_010 0.0951699397 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
19 Hb_001059_100 0.0953406015 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
20 Hb_003777_160 0.0957884587 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002813_010 Hb_002813_010 Hb_005946_170 Hb_005946_170 Hb_002813_010--Hb_005946_170 Hb_001080_270 Hb_001080_270 Hb_002813_010--Hb_001080_270 Hb_000421_120 Hb_000421_120 Hb_002813_010--Hb_000421_120 Hb_000865_080 Hb_000865_080 Hb_002813_010--Hb_000865_080 Hb_002524_040 Hb_002524_040 Hb_002813_010--Hb_002524_040 Hb_004162_280 Hb_004162_280 Hb_002813_010--Hb_004162_280 Hb_002477_150 Hb_002477_150 Hb_005946_170--Hb_002477_150 Hb_001059_100 Hb_001059_100 Hb_005946_170--Hb_001059_100 Hb_148209_020 Hb_148209_020 Hb_005946_170--Hb_148209_020 Hb_000813_100 Hb_000813_100 Hb_005946_170--Hb_000813_100 Hb_004543_030 Hb_004543_030 Hb_005946_170--Hb_004543_030 Hb_000227_380 Hb_000227_380 Hb_001080_270--Hb_000227_380 Hb_004718_010 Hb_004718_010 Hb_001080_270--Hb_004718_010 Hb_002411_120 Hb_002411_120 Hb_001080_270--Hb_002411_120 Hb_000997_030 Hb_000997_030 Hb_001080_270--Hb_000997_030 Hb_000959_040 Hb_000959_040 Hb_001080_270--Hb_000959_040 Hb_001080_270--Hb_000813_100 Hb_000224_060 Hb_000224_060 Hb_000421_120--Hb_000224_060 Hb_000046_010 Hb_000046_010 Hb_000421_120--Hb_000046_010 Hb_000421_120--Hb_000865_080 Hb_076693_020 Hb_076693_020 Hb_000421_120--Hb_076693_020 Hb_001168_040 Hb_001168_040 Hb_000421_120--Hb_001168_040 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_002524_040--Hb_004543_030 Hb_000139_090 Hb_000139_090 Hb_002524_040--Hb_000139_090 Hb_007576_120 Hb_007576_120 Hb_002524_040--Hb_007576_120 Hb_030565_090 Hb_030565_090 Hb_002524_040--Hb_030565_090 Hb_001247_070 Hb_001247_070 Hb_002524_040--Hb_001247_070 Hb_034243_020 Hb_034243_020 Hb_002524_040--Hb_034243_020 Hb_144787_030 Hb_144787_030 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_000510_310 Hb_000510_310 Hb_004162_280--Hb_000510_310 Hb_000139_250 Hb_000139_250 Hb_004162_280--Hb_000139_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1257 33.0234 5.65669 6.15099 33.4289 28.2271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7721 13.2727 12.3303 12.6903 9.17045

CAGE analysis