Hb_002813_040

Information

Type -
Description -
Location Contig2813: 53712-54344
Sequence    

Annotation

kegg
ID rcu:RCOM_0301510
description hypothetical protein
nr
ID XP_012074140.1
description PREDICTED: PRA1 family protein G2 [Jatropha curcas]
swissprot
ID Q9FH16
description PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1
trembl
ID A0A067KVM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09525 PE=4 SV=1
Gene Ontology
ID GO:0005783
description pra1 family protein g2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29449: 53783-54567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002813_040 0.0 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
2 Hb_001488_070 0.0643121344 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003581_070 0.0743959753 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
4 Hb_029866_090 0.0810504127 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
5 Hb_031527_040 0.0846005781 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
6 Hb_002256_030 0.089516034 - - conserved hypothetical protein [Ricinus communis]
7 Hb_020956_020 0.0903816024 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
8 Hb_000120_330 0.0904672945 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001195_600 0.0941596923 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
10 Hb_000866_220 0.09545695 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
11 Hb_000099_080 0.0964409675 - - kinesin light chain, putative [Ricinus communis]
12 Hb_000125_170 0.0969111366 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
13 Hb_000178_130 0.0971413676 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
14 Hb_000417_040 0.098149461 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
15 Hb_000181_070 0.0989102201 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_008725_260 0.0998552075 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
17 Hb_000210_230 0.0999339007 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
18 Hb_000690_180 0.1010394631 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
19 Hb_002301_060 0.1014405529 - - hypothetical protein JCGZ_21483 [Jatropha curcas]
20 Hb_000563_320 0.1020042323 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002813_040 Hb_002813_040 Hb_001488_070 Hb_001488_070 Hb_002813_040--Hb_001488_070 Hb_003581_070 Hb_003581_070 Hb_002813_040--Hb_003581_070 Hb_029866_090 Hb_029866_090 Hb_002813_040--Hb_029866_090 Hb_031527_040 Hb_031527_040 Hb_002813_040--Hb_031527_040 Hb_002256_030 Hb_002256_030 Hb_002813_040--Hb_002256_030 Hb_020956_020 Hb_020956_020 Hb_002813_040--Hb_020956_020 Hb_000512_060 Hb_000512_060 Hb_001488_070--Hb_000512_060 Hb_000175_460 Hb_000175_460 Hb_001488_070--Hb_000175_460 Hb_001488_070--Hb_031527_040 Hb_005686_060 Hb_005686_060 Hb_001488_070--Hb_005686_060 Hb_000510_320 Hb_000510_320 Hb_001488_070--Hb_000510_320 Hb_003052_140 Hb_003052_140 Hb_003581_070--Hb_003052_140 Hb_004228_030 Hb_004228_030 Hb_003581_070--Hb_004228_030 Hb_003581_070--Hb_002256_030 Hb_000125_170 Hb_000125_170 Hb_003581_070--Hb_000125_170 Hb_003371_150 Hb_003371_150 Hb_003581_070--Hb_003371_150 Hb_000876_070 Hb_000876_070 Hb_029866_090--Hb_000876_070 Hb_029866_090--Hb_020956_020 Hb_001552_020 Hb_001552_020 Hb_029866_090--Hb_001552_020 Hb_003057_100 Hb_003057_100 Hb_029866_090--Hb_003057_100 Hb_002739_100 Hb_002739_100 Hb_029866_090--Hb_002739_100 Hb_005539_350 Hb_005539_350 Hb_029866_090--Hb_005539_350 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_036790_100 Hb_036790_100 Hb_002256_030--Hb_036790_100 Hb_002256_030--Hb_031527_040 Hb_004032_360 Hb_004032_360 Hb_002256_030--Hb_004032_360 Hb_002256_030--Hb_001552_020 Hb_002256_030--Hb_001242_060 Hb_002256_030--Hb_002739_100 Hb_000510_130 Hb_000510_130 Hb_020956_020--Hb_000510_130 Hb_010504_020 Hb_010504_020 Hb_020956_020--Hb_010504_020 Hb_096563_010 Hb_096563_010 Hb_020956_020--Hb_096563_010 Hb_001226_160 Hb_001226_160 Hb_020956_020--Hb_001226_160 Hb_005305_080 Hb_005305_080 Hb_020956_020--Hb_005305_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72377 8.42982 3.95423 6.75484 6.47295 7.94315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.00024 13.2786 9.43759 2.90949 2.71971

CAGE analysis