Hb_002813_050

Information

Type desease resistance
Description Gene Name: TIR_2
Location Contig2813: 55081-58059
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47610g
description POPTRDRAFT_753803; hypothetical protein
nr
ID XP_012074169.1
description PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09526 PE=4 SV=1
Gene Ontology
ID GO:0005524
description tir-nbs resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29451: 54978-55444 , PASA_asmbl_29454: 57270-57534 , PASA_asmbl_29455: 58190-58464 , PASA_asmbl_29456: 58553-58805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002813_050 0.0 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
2 Hb_000000_370 0.0940241208 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
3 Hb_000859_060 0.0946895887 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
4 Hb_004785_060 0.0951921019 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
5 Hb_012395_220 0.095334998 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
6 Hb_001141_390 0.0964666558 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
7 Hb_012807_050 0.0968219728 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
8 Hb_000237_080 0.1009658565 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
9 Hb_000500_040 0.1034051547 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005015_070 0.1043856073 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
11 Hb_001277_270 0.105090355 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
12 Hb_005843_100 0.1066762253 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
13 Hb_000680_050 0.1075831445 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
14 Hb_000085_100 0.1084070172 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
15 Hb_000203_160 0.1089820722 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
16 Hb_003106_040 0.1092273505 - - lipase, putative [Ricinus communis]
17 Hb_031042_020 0.1108089164 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
18 Hb_000976_150 0.1114433748 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
19 Hb_005147_090 0.1130331568 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
20 Hb_001584_160 0.1137444778 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]

Gene co-expression network

sample Hb_002813_050 Hb_002813_050 Hb_000000_370 Hb_000000_370 Hb_002813_050--Hb_000000_370 Hb_000859_060 Hb_000859_060 Hb_002813_050--Hb_000859_060 Hb_004785_060 Hb_004785_060 Hb_002813_050--Hb_004785_060 Hb_012395_220 Hb_012395_220 Hb_002813_050--Hb_012395_220 Hb_001141_390 Hb_001141_390 Hb_002813_050--Hb_001141_390 Hb_012807_050 Hb_012807_050 Hb_002813_050--Hb_012807_050 Hb_004837_040 Hb_004837_040 Hb_000000_370--Hb_004837_040 Hb_000000_370--Hb_004785_060 Hb_000000_370--Hb_000859_060 Hb_000085_100 Hb_000085_100 Hb_000000_370--Hb_000085_100 Hb_000062_250 Hb_000062_250 Hb_000000_370--Hb_000062_250 Hb_000000_370--Hb_012807_050 Hb_000859_060--Hb_004785_060 Hb_000859_060--Hb_000085_100 Hb_009767_100 Hb_009767_100 Hb_000859_060--Hb_009767_100 Hb_001178_140 Hb_001178_140 Hb_000859_060--Hb_001178_140 Hb_004355_020 Hb_004355_020 Hb_000859_060--Hb_004355_020 Hb_004785_060--Hb_012807_050 Hb_001021_170 Hb_001021_170 Hb_004785_060--Hb_001021_170 Hb_004785_060--Hb_004355_020 Hb_000181_070 Hb_000181_070 Hb_004785_060--Hb_000181_070 Hb_012395_220--Hb_012807_050 Hb_000680_050 Hb_000680_050 Hb_012395_220--Hb_000680_050 Hb_010172_090 Hb_010172_090 Hb_012395_220--Hb_010172_090 Hb_000500_040 Hb_000500_040 Hb_012395_220--Hb_000500_040 Hb_012395_220--Hb_001141_390 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_001141_390--Hb_000680_050 Hb_002374_310 Hb_002374_310 Hb_001141_390--Hb_002374_310 Hb_048219_010 Hb_048219_010 Hb_001141_390--Hb_048219_010 Hb_005015_070 Hb_005015_070 Hb_001141_390--Hb_005015_070 Hb_001584_150 Hb_001584_150 Hb_001141_390--Hb_001584_150 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_012807_050--Hb_010172_090 Hb_076693_020 Hb_076693_020 Hb_012807_050--Hb_076693_020 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16338 4.01644 0.817175 0.898505 2.67922 2.50842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29631 2.65874 4.86516 1.77589 0.589286

CAGE analysis