Hb_002814_070

Information

Type -
Description -
Location Contig2814: 144627-147721
Sequence    

Annotation

kegg
ID vvi:104877459
description uncharacterized LOC104877459
nr
ID XP_010644016.1
description PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B0T8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024672 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002814_070 0.0 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
2 Hb_002631_030 0.1088763721 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000329_760 0.1112889076 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
4 Hb_031340_050 0.1114535166 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
5 Hb_002197_050 0.111928798 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
6 Hb_009687_010 0.1119560058 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
7 Hb_000137_090 0.1142342736 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
8 Hb_001195_200 0.1275544455 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
9 Hb_012633_040 0.1295612616 - - -
10 Hb_012490_070 0.1298565991 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002471_290 0.1303788591 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
12 Hb_002027_140 0.1309237651 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
13 Hb_001946_290 0.131087425 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
14 Hb_000031_120 0.1314278307 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
15 Hb_000003_320 0.1325481576 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
16 Hb_000258_260 0.1328989494 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
17 Hb_001545_080 0.133191996 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
18 Hb_003465_030 0.1334095409 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001671_100 0.1351263988 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
20 Hb_001489_090 0.1355274973 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]

Gene co-expression network

sample Hb_002814_070 Hb_002814_070 Hb_002631_030 Hb_002631_030 Hb_002814_070--Hb_002631_030 Hb_000329_760 Hb_000329_760 Hb_002814_070--Hb_000329_760 Hb_031340_050 Hb_031340_050 Hb_002814_070--Hb_031340_050 Hb_002197_050 Hb_002197_050 Hb_002814_070--Hb_002197_050 Hb_009687_010 Hb_009687_010 Hb_002814_070--Hb_009687_010 Hb_000137_090 Hb_000137_090 Hb_002814_070--Hb_000137_090 Hb_002631_030--Hb_000329_760 Hb_001946_290 Hb_001946_290 Hb_002631_030--Hb_001946_290 Hb_002631_030--Hb_000137_090 Hb_000460_030 Hb_000460_030 Hb_002631_030--Hb_000460_030 Hb_002006_030 Hb_002006_030 Hb_002631_030--Hb_002006_030 Hb_002631_030--Hb_031340_050 Hb_001414_030 Hb_001414_030 Hb_000329_760--Hb_001414_030 Hb_012490_070 Hb_012490_070 Hb_000329_760--Hb_012490_070 Hb_001195_200 Hb_001195_200 Hb_000329_760--Hb_001195_200 Hb_000258_260 Hb_000258_260 Hb_000329_760--Hb_000258_260 Hb_002014_020 Hb_002014_020 Hb_000329_760--Hb_002014_020 Hb_031340_050--Hb_000137_090 Hb_001357_250 Hb_001357_250 Hb_031340_050--Hb_001357_250 Hb_031340_050--Hb_002197_050 Hb_001579_220 Hb_001579_220 Hb_031340_050--Hb_001579_220 Hb_000252_170 Hb_000252_170 Hb_031340_050--Hb_000252_170 Hb_023732_030 Hb_023732_030 Hb_031340_050--Hb_023732_030 Hb_002197_050--Hb_000137_090 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_000103_270 Hb_000103_270 Hb_009687_010--Hb_000103_270 Hb_005914_010 Hb_005914_010 Hb_009687_010--Hb_005914_010 Hb_105602_010 Hb_105602_010 Hb_009687_010--Hb_105602_010 Hb_002027_140 Hb_002027_140 Hb_009687_010--Hb_002027_140 Hb_006698_030 Hb_006698_030 Hb_009687_010--Hb_006698_030 Hb_009687_010--Hb_000329_760 Hb_000137_090--Hb_001357_250 Hb_000031_120 Hb_000031_120 Hb_000137_090--Hb_000031_120 Hb_000139_290 Hb_000139_290 Hb_000137_090--Hb_000139_290 Hb_001009_250 Hb_001009_250 Hb_000137_090--Hb_001009_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0456539 0.0458251 0.0542716 0.0379405 0.0916096 0.0455522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104609 0.123409 0.0755888 0.165532 0.0839995

CAGE analysis