Hb_002814_110

Information

Type -
Description -
Location Contig2814: 187292-190723
Sequence    

Annotation

kegg
ID rcu:RCOM_0701530
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_012071442.1
description PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
swissprot
ID Q9FII5
description Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1
trembl
ID A0A067L3G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03982 PE=4 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like protein kinase tdr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002814_110 0.0 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
2 Hb_011972_020 0.0721539994 - - protein binding protein, putative [Ricinus communis]
3 Hb_001153_050 0.0787140584 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
4 Hb_006573_160 0.079350759 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
5 Hb_000130_420 0.079876611 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
6 Hb_055235_020 0.0812194719 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
7 Hb_007800_020 0.0837361475 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
8 Hb_000635_040 0.0839532322 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
9 Hb_000238_040 0.0867097245 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
10 Hb_000527_010 0.0889418116 - - katanin P80 subunit, putative [Ricinus communis]
11 Hb_002477_250 0.0907360008 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
12 Hb_002942_210 0.0914867638 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
13 Hb_000264_070 0.0929191099 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
14 Hb_001405_190 0.0930387191 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
15 Hb_005322_050 0.0931592565 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
16 Hb_005895_010 0.0936930421 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
17 Hb_000362_170 0.093896792 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
18 Hb_005288_080 0.0940462659 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002014_040 0.0941489193 - - site-1 protease, putative [Ricinus communis]
20 Hb_000529_060 0.094516363 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002814_110 Hb_002814_110 Hb_011972_020 Hb_011972_020 Hb_002814_110--Hb_011972_020 Hb_001153_050 Hb_001153_050 Hb_002814_110--Hb_001153_050 Hb_006573_160 Hb_006573_160 Hb_002814_110--Hb_006573_160 Hb_000130_420 Hb_000130_420 Hb_002814_110--Hb_000130_420 Hb_055235_020 Hb_055235_020 Hb_002814_110--Hb_055235_020 Hb_007800_020 Hb_007800_020 Hb_002814_110--Hb_007800_020 Hb_011972_020--Hb_055235_020 Hb_000457_230 Hb_000457_230 Hb_011972_020--Hb_000457_230 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_002014_040 Hb_002014_040 Hb_011972_020--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_011972_020--Hb_000238_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_001153_050--Hb_006573_160 Hb_073973_150 Hb_073973_150 Hb_001153_050--Hb_073973_150 Hb_001153_050--Hb_011972_020 Hb_005323_010 Hb_005323_010 Hb_001153_050--Hb_005323_010 Hb_005895_010 Hb_005895_010 Hb_001153_050--Hb_005895_010 Hb_006573_160--Hb_011972_020 Hb_006573_160--Hb_098209_010 Hb_000302_170 Hb_000302_170 Hb_006573_160--Hb_000302_170 Hb_000102_050 Hb_000102_050 Hb_006573_160--Hb_000102_050 Hb_004912_030 Hb_004912_030 Hb_000130_420--Hb_004912_030 Hb_000362_170 Hb_000362_170 Hb_000130_420--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_000130_420--Hb_000635_040 Hb_000130_420--Hb_011972_020 Hb_000130_420--Hb_002014_040 Hb_000130_420--Hb_000238_040 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_055235_020--Hb_007044_110 Hb_004976_010 Hb_004976_010 Hb_055235_020--Hb_004976_010 Hb_001636_050 Hb_001636_050 Hb_055235_020--Hb_001636_050 Hb_055235_020--Hb_000457_230 Hb_007800_020--Hb_000635_040 Hb_000640_070 Hb_000640_070 Hb_007800_020--Hb_000640_070 Hb_007800_020--Hb_005895_010 Hb_007800_020--Hb_000362_170 Hb_000608_350 Hb_000608_350 Hb_007800_020--Hb_000608_350 Hb_001002_060 Hb_001002_060 Hb_007800_020--Hb_001002_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32896 1.63982 1.72568 1.56391 1.50618 0.831715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.661384 0.674226 0.429669 0.750791 1.26108

CAGE analysis